Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02879 ATGTTTGTCCACAAGGTTTTGTCCCGTGTGTCCACCACCGTTTCCCGAACCTCTTTTCTCTCTGCTTCCAAAACTTCCCAACACTTCTCCAATCACTTACATTCCCTTATTCACCAATCTCCCAACAAGTTGATTCCTGTTCAAGTCAATTTGTCACTGCTACGGATAAATTCATCATCAACTCCAAGATGTGGGTTTTTTTCATCAGCTTCAAGTGAAACTAATGACAAGGAAAAAGGGAAGAATATTAATATTGAAGATTCTACAAATGATAACCCTGATAAAGCAAACGAAAAGGCCAATAATTTTGAACAGGCCGGACAAGCTAAATCTGCAGATAAAACAGAGGAATCAAGTTCTATTTCTGATTCTCAATCTCAAACTGTAAAAGGAAGGAGGAGAGGTTTCAAACGAACAGCATTTTCTGATTCAGATTCAGATTCAGATTCAGATTCAGATTCAGAGAGTGAATATCTATCCAAGGATGATTTGATTAAACTTGTGGCTGAGAAAGAAGAACTTTTGAAGTTAAAGCACAAGGAGATTGAACAAATGCAGGATAAAGTTTTGCGTACTTATGCAGATATGGAGAATACCATGGAAAGGACACGACGTGAAGCAGATAATTCGAAAAAGTTTGCTATACAGAATTTTGCGAAGAGTTTACTAGATGTTGCGGACAATCTGGAAAGAGCTTCCTCGGTTGTAAAGGAAAGTTTTTCAAAAATTGATACACCTAGTGACTCTGCTGAAGCGGTAAAACTTCTGAAAACACTTCTGCAAGGTGTTGAAATGACCGAGAAACAATTGTCAGAGGTACTTAAAAAGTTTGGTGTAGAAAAATTTGATCCTACGAATGAGCCCTTTGACCCACACAGACATAATGCTGTCTTTCAAATTCCTGATGGTTCTAAGCCTCCAGGAACTGTTGCAGCTGTTCTGAAGGCAGGATACATGCTTTATGATCGTGTCATTCGCCCAGCAGAAGTTGGCGTGACTCAAGCAGTGAAGGATGATGATAATAAGGATTCATAG 1035 0.3894 MFVHKVLSRVSTTVSRTSFLSASKTSQHFSNHLHSLIHQSPNKLIPVQVNLSLLRINSSSTPRCGFFSSASSETNDKEKGKNINIEDSTNDNPDKANEKANNFEQAGQAKSADKTEESSSISDSQSQTVKGRRRGFKRTAFSDSDSDSDSDSDSESEYLSKDDLIKLVAEKEELLKLKHKEIEQMQDKVLRTYADMENTMERTRREADNSKKFAIQNFAKSLLDVADNLERASSVVKESFSKIDTPSDSAEAVKLLKTLLQGVEMTEKQLSEVLKKFGVEKFDPTNEPFDPHRHNAVFQIPDGSKPPGTVAAVLKAGYMLYDRVIRPAEVGVTQAVKDDDNKDS 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02879 344 CDD GrpE 183 332 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Viun8g02879 344 PANTHER GRPE PROTEIN 52 335 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Viun8g02879 344 Gene3D Head domain of nucleotide exchange factor GrpE 278 333 IPR009012 GO:0006457
Viun8g02879 344 MobiDBLite consensus disorder prediction 99 129 - -
Viun8g02879 344 ProSitePatterns grpE protein signature. 289 332 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Viun8g02879 344 Coils Coil 168 206 - -
Viun8g02879 344 Gene3D - 161 277 IPR013805 -
Viun8g02879 344 PRINTS GrpE protein signature 313 332 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Viun8g02879 344 PRINTS GrpE protein signature 190 206 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Viun8g02879 344 PRINTS GrpE protein signature 286 301 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Viun8g02879 344 FunFam GrpE protein homolog 162 277 - -
Viun8g02879 344 Pfam GrpE 168 333 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
Viun8g02879 344 SUPERFAMILY Coiled-coil domain of nucleotide exchange factor GrpE 170 278 IPR013805 -
Viun8g02879 344 SUPERFAMILY Head domain of nucleotide exchange factor GrpE 279 334 IPR009012 GO:0006457
Viun8g02879 344 MobiDBLite consensus disorder prediction 67 157 - -
Viun8g02879 344 FunFam GrpE protein homolog 278 334 - -
Viun8g02879 344 Hamap Protein GrpE [grpE]. 146 334 IPR000740 GO:0000774|GO:0006457|GO:0042803|GO:0051087
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02879 Viun-Chr8 36664710 36669775 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02879 K03687 - gmx:100803396 448.358
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g02879 8 36664710 36669775 Viun8g02879 8 36664710 36669775 ECH