Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02876 ATGGAGTTCGACCCGATCCCAATCGGTTCGTGCTCCAAACAACAGCAGGCGATCTACAAGGACTGGTTCAATTACGCTGATTCAGATAGCGATGGCCGCATTACGGGGAGTGACGCCACCAAGTTTTTCGCCATGTCCAACTTGTCTCGCCAAGATCTTAAGCAGGTGTGGGCTATTGCAGATACAAAGCGGCAAGGGTATCTTGGTTTCTCTGAATTTATCATTGCTATGCAGCTAGTTTCTTTGGCTCAATCTGGGCATTCAATAACACCCGATTTGCCGACTAGTAATGTTGATTTTACAAATCTGGAACCTCCCGTAATGGATGGTTTAGATGCATTACTAACTAAGAAAAAGCATAAACACAGAGAAGTTGAAACGAATGTAATTACAGGTAGTTCTCAATTGCAGCCATCACCATCGAGAAATTGGTTTTCTTCAAATTCAACTAAAAAGGTGCCTCTTTCCTCAGTGACATCAATAATTGACGGCTTGAAGAGGCTCTACCTTAACAAGTTGAAGCCATTAGAAGCGACTTACCGTTTTAATGATTTTGTATCGCCATTACTGACAAATAGTGACTTTGATGCCAAACCAATGGTTATGCTTTTGGGTCAGTACTCAACTGGTAAAACAACATTTATCAAACATCTCCTTAAAAGTAGTTATCCAGGAGCCCATATTGGACCTGAGCCAACAACTGATAGGTTTGTTGTTGTCATGTCTGGATCTGATGAGAGAACTGTTCCTGGAAATACTGTTGCTGTCCAAGCAGACATGCCATTTAGTGGCCTTACAACTTTTGGCACAGCATTTTTGTCAAAATTTGTGTGTTCACAGATGCCTCATCCTCTACTAGAACACATCACATTTGTTGACACTCCCGGAGTTTTGTCTGGAGAAAAGCAAAGGACACAACGGGCATATGATTTTACGGGCGTGACATCTTGGTTTGCTGCCAAGTGCGATTTGATACTTTTATTGTTTGATCCTCACAAACTTGACATTAGTGATGAGTTCAATCGTGTGATATCATCCTTACGGGGACATGATGACAAAATCCGAGTAGTTTTGAATAAGGCAGACCAAGTTGATACCCAACAATTGATGAGGGTTTATGGCGCCTTAATGTGGTCACTTGGGAAGGTGTTGAAGACACCTGAAGTAATGCGTGTGTATATTGGCTCCTTCAATGACATGCCTGTAAATGATGTTGCCACTGGTCCACTTGGTAAGGAACTATTTGAAAAGGAACAAGATGATCTTCTTTCGGATCTGAAAGATATACCAAAAGCAGCTTGTGATCGAAGAATCAATGAGTTTGTAAAACGAGCCCGAGCAGCCAAGATACATGCGTATATTATCAGTCATCTAAAAAAGGAGATGCCTGCTATGATAGGCAAATCTAAAGCTCAGCAAAAGCTCATTGATAATTTGGCAGCTGAATTTGGAAAGGTGCAAAGGGAGTTCCATTTACCTCCTGGTGATTTCCCAAATGTAGAGTATTTTAGGGAGAGATTGAGTGGTTACAATATTGATAAGTTTGAAAAATTGAAACCAAAGATGATACAAGCAGTTGATGACATGTTAGCCTACGATATTCCTAACCTCTTGAAGAATTTTAGGAATCCCTATGATTAA 1641 0.4083 MEFDPIPIGSCSKQQQAIYKDWFNYADSDSDGRITGSDATKFFAMSNLSRQDLKQVWAIADTKRQGYLGFSEFIIAMQLVSLAQSGHSITPDLPTSNVDFTNLEPPVMDGLDALLTKKKHKHREVETNVITGSSQLQPSPSRNWFSSNSTKKVPLSSVTSIIDGLKRLYLNKLKPLEATYRFNDFVSPLLTNSDFDAKPMVMLLGQYSTGKTTFIKHLLKSSYPGAHIGPEPTTDRFVVVMSGSDERTVPGNTVAVQADMPFSGLTTFGTAFLSKFVCSQMPHPLLEHITFVDTPGVLSGEKQRTQRAYDFTGVTSWFAAKCDLILLLFDPHKLDISDEFNRVISSLRGHDDKIRVVLNKADQVDTQQLMRVYGALMWSLGKVLKTPEVMRVYIGSFNDMPVNDVATGPLGKELFEKEQDDLLSDLKDIPKAACDRRINEFVKRARAAKIHAYIISHLKKEMPAMIGKSKAQQKLIDNLAAEFGKVQREFHLPPGDFPNVEYFRERLSGYNIDKFEKLKPKMIQAVDDMLAYDIPNLLKNFRNPYD 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02876 546 Pfam Cytoskeletal-regulatory complex EF hand 20 80 IPR000261 GO:0005515
Viun8g02876 546 CDD EHD 200 444 - -
Viun8g02876 546 CDD EH 19 85 IPR000261 GO:0005515
Viun8g02876 546 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 467 IPR027417 -
Viun8g02876 546 Pfam Domain of unknown function (DUF5600) 436 537 IPR040990 -
Viun8g02876 546 ProSiteProfiles EH domain profile. 15 96 IPR000261 GO:0005515
Viun8g02876 546 ProSiteProfiles Dynamin-type guanine nucleotide-binding (G) domain profile. 195 431 IPR030381 GO:0005525
Viun8g02876 546 Gene3D - 165 537 - -
Viun8g02876 546 Gene3D - 10 108 - -
Viun8g02876 546 ProSiteProfiles EF-hand calcium-binding domain profile. 48 83 IPR002048 GO:0005509
Viun8g02876 546 Pfam Dynamin family 201 360 IPR045063 -
Viun8g02876 546 FunFam EH domain-containing protein 1 201 429 - -
Viun8g02876 546 Pfam N-terminal EH-domain containing protein 164 196 IPR031692 -
Viun8g02876 546 PANTHER EH DOMAIN 17 543 - -
Viun8g02876 546 SMART eh_3 8 103 IPR000261 GO:0005515
Viun8g02876 546 SUPERFAMILY EF-hand 11 98 IPR011992 -
Viun8g02876 546 Gene3D - 201 429 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02876 Viun-Chr8 36656583 36663468 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02876 1 546 EF-hand Containing Proteins AT3G20290 80.769 0.0 905
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02876 K12483 - gmx:100804468 1031.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g02876 8 36656583 36663468 Viun8g02876 8 36656583 36663468 ECH