Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02825 ATGGAGGACATGGACGAAATCGACGCTGTTCCTCAGGTTTACATGGCTTGCATACTAAATGGTCATAGAATAGGAGTTTCTTATTATGATTCCACACTTCGACAACTTTATGTACTTGAAGTTTGGGATGATGGCGACAAAGGTTTTCCAATTATTGATCTGGTGAAATATCAAGCCAACCCTTTGGTTATTTACACAAGCACTAAAAGTGAAGAATCCTTCTTGTCTGCTCTGCAACAAAAGGATGGAGTAGCTGAGTATCCTACAGTAAAGCTTGTTAAAAGTTCAATATTCAGCTACGAGCAAGCATGGCATAGATTAATTTACCTGCGAGTGGCGGGGATGGATGATGGATTAAATATGAAGGAGAGGATTTACTATCTGAGTTCAATGATGGACATGGGAAGTGAAGTACAGGTTCGTGCTAGTGGTGGTCTCCTTGCAATACTAGAGGATGAAAGGATTGTAGATACTCTTGAACAGAAAGAATCAGGAAATACATCAATTTCAATTGATTCTGTTGCAGAAATTTCACTAAATAACTTTCTCAAACTTGATGCAGCAGCTCATGAAGCATTACAAATATTCCAAATTGACAAGCACCCAAGCCACATGGGAATCGGTAGAGCAAAAGAAGGGTTTTCAGTATTTGGAATGATCAATAAGTGTGTGACTCCGATGGGTAGACGTCTTTTGAGAAATTGGTTCTTAAGGCCTATTCTTGATCTTGAAGTGCTGAACTACCGTTTAAATTCTATATCTTTTTTTCTATGCTCAGAAGAACTTGTTGCTTCATTACGGGAAACCTTGAAATCTGTGAAGGATATACCCCACTTGCTGAAGAAATTTGACTGTCCAAGCTCTACGTGCACTAGCTCTGATTGGGCAGCTCTTCTAAAGAGTATTTGTGCGCTGTTGCATGTAAACAAGATTTTTGAAGTTGGAATGTCCGAAGACCTTCGTGAAGAATTGAAGTATTTAAACTTGGACATTGTCGAGAAGGCTAATTCATGTATAACAGCAGAACTTGGTTATGTTTATGAACTGGTAATTGGTGTTATTGATTTAAATAGAACTAAAGAGAAAGGTTATGCGACGGTTGTGAAGGAAGGTTTCTGTGACGAGTTAGATGAGCTGAGGCAAATATATGAGGAACTGCCGGAATTTCTGGAAGAGGTTTCATCGATGGAATTGGATCAACATCCTGGTCTATGCAAGGACAAGCGTGTTCCTTGCATTGTTTATATACAGCAAATAGGTTATTTAATGTGTATCTTTGAAGAAAAACCTGAAGAAACCTCTCTGGAGACACTTGTAGATTGGGAATACGCATTTTGTGACACAGATGGAGAGACAAAAAGATACTTTTATCGTACGCCAAAGACACGAGAATTGGATAGTCTGCTCGGTGATATCCACCATAAAATTCAAGATATGGAGAGGGCAATCACCAGAGATTTGTTTTCGCGTATATTGCTATTCCAGACCCTTTTGATAAAGGTGGCAACTTTTGCAGCTGAACTGGACTGCTTTTTGTCAATGGCATTGGTTGCACGGCAGAACAACTACGTCAGGCCTTCGTTGACTGAAGAAAATTTGCTTGATATAAAAAATGGAAGGCATGTTTTGCAGGAAATGACGGTAGACACATTTATTCCTAATGACACTAAGATTCTTCATGATGGAAGAATAAATATCATCACCGGTCCTAATTTTTCTGGAAAAAGTATCTATATAAAGCAGATTGCTATAATTGTTTTTCTCTCCCACATTGGTAGTTTTGTGCCAGCCGATTCAGCAACTGTGGGTCTAACAGATAGAATATTTTGTGCAACGGGAAGCAGGCTTATGACAGCTGAACAATCAACATTTATGATTGATCTACATCAAGTAGGGATGATGCTCAGGCATGCTACTTCGCAATCTCTGTGTTTGGTTGATGAATTTGGTAAAGGTACTCTTACAGAAGATGGCATTGGTCTACTTGCTGGAACCATAAATCACTTTGTCACATGTCATGAACCTCCAAAGGTTTTCGTGTGCACTCATCTCATGGATTTATTGCATGGACATTCCCTGACCAAGTCTGAGCAGATTAAGTTTTACACAATGAGTATACTGAGGCCTGACGACAATTCCACATACATTGACGACATTGTATTTTTATACAGGCTTATCCCTGGACATGCCCATCATAGCTACGGTGTACCAGAGGAAATTGTAAAAAGAGCTGCTGCTGTGTTGGATACCGTTTCAAATAATAATCATGTCGAGCGGTTATGCAATGAGAACATCTCTGCCCAAGATCGTCAATGCAAGGATGCCATGGATAAACTGTTGGAATTCGATATTGAAAAAGGCGACTTAAAACTTTTCTTTGAGGATATATTTTCTCCAGTTCTTAATGCATCGTGA 2415 0.3925 MEDMDEIDAVPQVYMACILNGHRIGVSYYDSTLRQLYVLEVWDDGDKGFPIIDLVKYQANPLVIYTSTKSEESFLSALQQKDGVAEYPTVKLVKSSIFSYEQAWHRLIYLRVAGMDDGLNMKERIYYLSSMMDMGSEVQVRASGGLLAILEDERIVDTLEQKESGNTSISIDSVAEISLNNFLKLDAAAHEALQIFQIDKHPSHMGIGRAKEGFSVFGMINKCVTPMGRRLLRNWFLRPILDLEVLNYRLNSISFFLCSEELVASLRETLKSVKDIPHLLKKFDCPSSTCTSSDWAALLKSICALLHVNKIFEVGMSEDLREELKYLNLDIVEKANSCITAELGYVYELVIGVIDLNRTKEKGYATVVKEGFCDELDELRQIYEELPEFLEEVSSMELDQHPGLCKDKRVPCIVYIQQIGYLMCIFEEKPEETSLETLVDWEYAFCDTDGETKRYFYRTPKTRELDSLLGDIHHKIQDMERAITRDLFSRILLFQTLLIKVATFAAELDCFLSMALVARQNNYVRPSLTEENLLDIKNGRHVLQEMTVDTFIPNDTKILHDGRINIITGPNFSGKSIYIKQIAIIVFLSHIGSFVPADSATVGLTDRIFCATGSRLMTAEQSTFMIDLHQVGMMLRHATSQSLCLVDEFGKGTLTEDGIGLLAGTINHFVTCHEPPKVFVCTHLMDLLHGHSLTKSEQIKFYTMSILRPDDNSTYIDDIVFLYRLIPGHAHHSYGVPEEIVKRAAAVLDTVSNNNHVERLCNENISAQDRQCKDAMDKLLEFDIEKGDLKLFFEDIFSPVLNAS 804
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02825 804 FunFam DNA mismatch repair protein MSH5 524 782 - -
Viun8g02825 804 Gene3D - 183 409 - -
Viun8g02825 804 ProSitePatterns DNA mismatch repair proteins mutS family signature. 642 658 IPR000432 GO:0005524|GO:0006298|GO:0030983
Viun8g02825 804 Pfam MutS family domain IV 371 473 IPR007861 GO:0005524|GO:0006298|GO:0030983
Viun8g02825 804 PANTHER DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER 53 765 IPR045076 GO:0005524|GO:0006298|GO:0030983|GO:0140664
Viun8g02825 804 SMART DNAend 211 547 IPR007696 GO:0005524|GO:0006298|GO:0030983
Viun8g02825 804 PIRSF MSH2 1 789 IPR011184 GO:0005524|GO:0006298|GO:0030983
Viun8g02825 804 CDD ABC_MSH5_euk 535 736 - -
Viun8g02825 804 FunFam DNA mismatch repair protein MSH5 183 409 - -
Viun8g02825 804 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 523 751 IPR027417 -
Viun8g02825 804 Gene3D - 523 787 IPR027417 -
Viun8g02825 804 SMART mutATP5 562 749 IPR000432 GO:0005524|GO:0006298|GO:0030983
Viun8g02825 804 Pfam MutS domain III 190 515 IPR007696 GO:0005524|GO:0006298|GO:0030983
Viun8g02825 804 SUPERFAMILY DNA repair protein MutS, domain III 186 522 IPR036187 -
Viun8g02825 804 Pfam MutS domain V 566 745 IPR000432 GO:0005524|GO:0006298|GO:0030983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02825 Viun-Chr8 36487600 36502336 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02825 K08741 - gmx:100797567 1489.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g02825 8 36487600 36502336 Viun8g02825 8 36487600 36502336 ECH