Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02525 ATGGACCTCCGCCACCGCGCGCCGCCCACCGTCCACGACGGAGCTATCCACCATCCCAACCGCGGCGGGAAGAGGGATTCCTCTTCCACACCATCGGTGTCCTCTCCTAAGGCCTCCGACGCGCTCCCTCTGCCGCTATACCTCACGAACGCGATCTTCTTCACTCTGTTCTTCTCCGTCGCGTACTTCCTCCTGCACCGGTGGCGTGACAAGATCCGCAGCCACACACCTCTCCACGTAGTCACGCTCTCCGAGATTGCTGCTATTTTCTCTCTCATTGCCTCATTCATCTACCTCCTCGGCTTCTTCGGCATCGACTTCGTCCAGTCCTTCATCACACGCGCCTCGCACGACGCGTGGGACGTCGACGAAGCTGTTTCGGAACCCTCGCCCGCGCCCTCGCCCTCTCCGTCAATTACCAAATTGCCCCCTGTTGAGTGCTCGTTGATCTCCCAAGACGACGAGGACATTGTCTGCTCCGTTGTGGACGGCGTTACGCCGTCCTATGCGCTCGAGTCTCGCCTCGGAGACTGTCGCCGTGCTGCGGCGATTCGGCGCGCGGCTCTGCAGAGGATGACGGGGCGGTCGCTGGAGGGGCTGCCGCTGGAGGGTTTCGATTACGACTCGATTTTGGGGCAGTGCTGCGAAATGCCGGTGGGATACGTGCAGATTCCTGTGGGGGTGGCGGGGCCGCTGCTGCTGGACGGGTTCGAGTACACGGTGCCGATGGCCACCACGGAGGGGTGCCTTGTTGCCAGCACCAATCGAGGGTGCAAAGCCATATATGCATCTGGTGGGGCCAGCAGTGTTGTTTTGAGGGATTGCATGTCAAGGGCACCTGTTGTGAGGTTCTCCACTGCTAAGAGGGCTGCACAGTTGAAGTTCTTCTTGGAGGATCCTCTCAATTTTGATACCCTTGCCGTTGTTTTCAACAGGTCGAGTAGATTTGCGAGGCTGCAAGGCATTCAGTGTGCTATGGCTGGAAAGAACGTTTATTTGAGATTCACTTGTAGCACGGGTGATGCCATGGGTATGAACATGGTTTCCAAAGGGGTGCAAAACGTTCTTGACTTTCTTCAGACTGATTTCCCTGACATGGATGTTATTGGCATTTCTGGAAATTATTGTTCGGATAAGAAGCCAGCTGCAGTAAATTGGATCGAGGGACGTGGGAAATCTGTTGTTTGTGAAGCAATTATTAAAGAAGAAGTGGTGAAGAAGGTATTGAAGACCAACGTGCCTGCCCTGGTGGAGCTTAACATGCTTAAAAACCTTACTGGTTCCGCTATTGCTGGTGCTCTTGGTGGATTCAATGCCCATGCTAGTAACATTGTTTCTGCAGTCTTTATAGCCACTGGTCAAGATCCAGCACAAAATATCGAGAGTTCCCATTGCATAACCATGATGGAAGCCGTTAATGATGGGAGGGACCTTCACATCTCGGTCACCATGCCTTCTATTGAGGTGGGTACTGTTGGGGGTGGAACTCAACTTGCATCCCAGTCTGCTTGCTTGAATTTACTTGGTGTGAAGGGTGCGAGCAAGGAGTCACCGGGATCAAACTCAAGACTTTTGGCCGCCATTGTTGCTGGATCTGTTTTAGCCGGAGAGTTGTCTCTGATGTCTGCGATTGCAGCGGGGCAGCTGGTCAACAGCCACATGAAATATAACAGATCAAGCAAAGATGTAACCAAAATATCATCTTGA 1707 0.5354 MDLRHRAPPTVHDGAIHHPNRGGKRDSSSTPSVSSPKASDALPLPLYLTNAIFFTLFFSVAYFLLHRWRDKIRSHTPLHVVTLSEIAAIFSLIASFIYLLGFFGIDFVQSFITRASHDAWDVDEAVSEPSPAPSPSPSITKLPPVECSLISQDDEDIVCSVVDGVTPSYALESRLGDCRRAAAIRRAALQRMTGRSLEGLPLEGFDYDSILGQCCEMPVGYVQIPVGVAGPLLLDGFEYTVPMATTEGCLVASTNRGCKAIYASGGASSVVLRDCMSRAPVVRFSTAKRAAQLKFFLEDPLNFDTLAVVFNRSSRFARLQGIQCAMAGKNVYLRFTCSTGDAMGMNMVSKGVQNVLDFLQTDFPDMDVIGISGNYCSDKKPAAVNWIEGRGKSVVCEAIIKEEVVKKVLKTNVPALVELNMLKNLTGSAIAGALGGFNAHASNIVSAVFIATGQDPAQNIESSHCITMMEAVNDGRDLHISVTMPSIEVGTVGGGTQLASQSACLNLLGVKGASKESPGSNSRLLAAIVAGSVLAGELSLMSAIAAGQLVNSHMKYNRSSKDVTKISS 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02525 568 ProSiteProfiles Hydroxymethylglutaryl-coenzyme A reductases family profile. 154 558 IPR002202 GO:0004420|GO:0015936
Viun8g02525 568 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 150 224 - -
Viun8g02525 568 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 2. 489 496 IPR023076 GO:0004420
Viun8g02525 568 Gene3D - 275 391 IPR009023 -
Viun8g02525 568 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 241 261 IPR002202 GO:0004420|GO:0015936
Viun8g02525 568 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 423 449 IPR002202 GO:0004420|GO:0015936
Viun8g02525 568 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 332 350 IPR002202 GO:0004420|GO:0015936
Viun8g02525 568 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 372 397 IPR002202 GO:0004420|GO:0015936
Viun8g02525 568 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 214 235 IPR002202 GO:0004420|GO:0015936
Viun8g02525 568 PRINTS Hydroxymethylglutaryl-coenzyme A reductase signature 477 498 IPR002202 GO:0004420|GO:0015936
Viun8g02525 568 SUPERFAMILY NAD-binding domain of HMG-CoA reductase 276 391 IPR009023 -
Viun8g02525 568 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 275 391 - -
Viun8g02525 568 PANTHER 3-HYDROXY-3-METHYLGLUTARYL-COENZYME A REDUCTASE 33 562 IPR002202 GO:0004420|GO:0015936
Viun8g02525 568 MobiDBLite consensus disorder prediction 1 24 - -
Viun8g02525 568 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 3. 543 556 IPR023076 GO:0004420
Viun8g02525 568 ProSitePatterns Hydroxymethylglutaryl-coenzyme A reductases signature 1. 334 348 IPR023076 GO:0004420
Viun8g02525 568 MobiDBLite consensus disorder prediction 1 38 - -
Viun8g02525 568 CDD HMG-CoA_reductase_classI 155 558 IPR004554 GO:0004420|GO:0005515|GO:0008299
Viun8g02525 568 FunFam 3-hydroxy-3-methylglutaryl coenzyme A reductase 380 553 - -
Viun8g02525 568 Pfam Hydroxymethylglutaryl-coenzyme A reductase 182 558 IPR002202 GO:0004420|GO:0015936
Viun8g02525 568 SUPERFAMILY Substrate-binding domain of HMG-CoA reductase 148 547 IPR009029 GO:0015936|GO:0016616
Viun8g02525 568 Gene3D - 150 224 IPR023282 GO:0004420
Viun8g02525 568 NCBIfam hydroxymethylglutaryl-CoA reductase (NADPH) 154 558 IPR004554 GO:0004420|GO:0005515|GO:0008299
Viun8g02525 568 Gene3D - 225 553 IPR023074 GO:0004420
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02525 Viun-Chr8 34722890 34726309 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g02525 1 564 Lipid Metabolism Gene Families AT1G76490 74.614 0.0 888
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02525 K00021 - gmx:100777317 970.689
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g02525 8 34722890 34726309 Viun2g01697 2 26520505 26524223 ECH
Viun8g02525 8 34722890 34726309 Viun8g02525 8 34722890 34726309 ECH