Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g02056 ATGGTGTGGGGACTCTTCCCCGTTGATCCTCTTTCAGGTGAAGATAAGTACTATATTTTCAAAACTGGAATTTACAAAGTTGGTCGAAAAGGTTGTGATGTGATAATCACTAAAGATAAAGGTGTTTCTCGGGTTCATGCAGAAATAGTTGTTAATACGATGAACCTGGTAAATTCTTTACCAAATGAATGTTCTCATTTGTCACCCAGTATACATATTAGAGATTGCTCCAAGTATGGGACATTTATTAGCAAAAATGTTGGGCCCAAGAAAAAAGTTCATGAGCTACCAAACAAACAAACACCACTAGAGGATGGTGACTTTGTCTCTTTTGGCACCGGTAGTGCTACCTATAAGTTTTGCCATGTACCCCTCGTTTTTTTCATCTGTTCCTCAAATGAAGTGGATCAATCCTTTCAAGAGAAAATTTCATCAATTGGTGCTAGTTTTACTCATACCTTAGGTGAAGGGTGCACACATGTACTGGTAGATCAACTCATGCCGTTGAAGAAGGATCTTGTTGATGCTGTTGTGGCAAAAAAATCTTGTGTTCTTAAAAATTGGCTTGAGTTTTTTGCGGAAAAGAATATCAGCATTGAAATTCCTAGCTGTCATTCTAGATATATTCCAACAGTGTCAGTGGACGGAGAATCTATAAAAATTGTCGACCCCAGATCGCGTGAAGATTGTTTGAAAGGATACACTTTTTTGTTGGAATCTGAGCATTTGTATAAATTTCAGGATCAGCTAAAATCTTTATTGGAAGTGGCTGGTGCAAAAGTTGTTTCCTCCGGAGAGTTTTGTTCAAATAGTCAAGATTCAAATTATGGAGAGGATAATCATGTGGTTTGTGTCATCCCAGAAAGACCAGCATGCAAGTCTAATCTCTCTGATAAACTGAATTCCTTGCTTAGAGTTAGTGAGATAGATATAATTTGTGCTGCTCTGAGTGGACAGCTAGATCTCTCTATTTTGAGATCACCATGCATACTTGTTTCGTCATCATGCTCTACAGATGAGACAATTGTTGCAGATTCAGATACAGAAGTTGAAACAGCCACGTCAGCCCGTTCCACTGAAGCATTAAGCAACGACAATAATGTAAAATATGAAAAAACAGAAGAAATATATGACGATTCTTACACTTTGGATAAGAGAAAACATGAGAGTATAGAGGCATCCTCAGATGATGTTTTAACCAGATTGCATGACATTAAACGTACAAAAACAGAAAAATCCTTGGATGGTGCTTCTGTCAGATCACATGCTACCAACTTCGGGAACGATAACGATGGTGTCAAAGTAAAGAAAGACAACGTTGATGATAATGAAACTGGAAATTCAGATGTTGTTTACAGCCAAAATTTAATTGTTCGAGATACAAACATACGGAGTAGCATAAGCACTTCACCAAGCAGCAGTTTTCCAAATTTTAAATGTTTCAGAAAGGCACACACTCAGTCAGGTAATAGCTTTGACAATCTTGTTCCATTTGCAAAATATCCATACAAGGATTCTGACTGTGGGGATGATGAAATGTCTGAGTTAGTGAAGGAGGAGAAAAGGCGTAAGAAAATGGAAGCTGTCGCAGATGAACTATTTAATAATGAGAAGGCGAGGAAACGAGGCGCAGCTGGTTCACGAGGCACTGTTGGTTCTCTTCGTAGCATTCTTTCTTCATGA 1683 0.3827 MVWGLFPVDPLSGEDKYYIFKTGIYKVGRKGCDVIITKDKGVSRVHAEIVVNTMNLVNSLPNECSHLSPSIHIRDCSKYGTFISKNVGPKKKVHELPNKQTPLEDGDFVSFGTGSATYKFCHVPLVFFICSSNEVDQSFQEKISSIGASFTHTLGEGCTHVLVDQLMPLKKDLVDAVVAKKSCVLKNWLEFFAEKNISIEIPSCHSRYIPTVSVDGESIKIVDPRSREDCLKGYTFLLESEHLYKFQDQLKSLLEVAGAKVVSSGEFCSNSQDSNYGEDNHVVCVIPERPACKSNLSDKLNSLLRVSEIDIICAALSGQLDLSILRSPCILVSSSCSTDETIVADSDTEVETATSARSTEALSNDNNVKYEKTEEIYDDSYTLDKRKHESIEASSDDVLTRLHDIKRTKTEKSLDGASVRSHATNFGNDNDGVKVKKDNVDDNETGNSDVVYSQNLIVRDTNIRSSISTSPSSSFPNFKCFRKAHTQSGNSFDNLVPFAKYPYKDSDCGDDEMSELVKEEKRRKKMEAVADELFNNEKARKRGAAGSRGTVGSLRSILSS 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g02056 560 PANTHER NIBRIN-RELATED 418 540 IPR040227 GO:0006302|GO:0007095|GO:0030870
Viun8g02056 560 CDD BRCT 127 190 - -
Viun8g02056 560 Gene3D BRCT domain 122 201 IPR036420 -
Viun8g02056 560 CDD FHA_NBN 3 122 - -
Viun8g02056 560 MobiDBLite consensus disorder prediction 535 560 - -
Viun8g02056 560 MobiDBLite consensus disorder prediction 413 447 - -
Viun8g02056 560 Pfam FHA domain 25 112 IPR000253 GO:0005515
Viun8g02056 560 Gene3D - 4 121 - -
Viun8g02056 560 Coils Coil 516 536 - -
Viun8g02056 560 FunFam Nibrin 5 121 - -
Viun8g02056 560 ProSiteProfiles Forkhead-associated (FHA) domain profile. 25 84 IPR000253 GO:0005515
Viun8g02056 560 SUPERFAMILY SMAD/FHA domain 16 130 IPR008984 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g02056 Viun-Chr8 31086000 31094207 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g02056 K10867 - gmx:100783205 906.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g02056 8 31086000 31094207 Viun8g02056 8 31086000 31094207 ECH