Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01654 ATGGCCATGGCACTTCGCAGACTTTCCTCCACCATCAACAAACCGTTCTCCAACGCCACTTCCATTTATCGCACGTCGTCTTCGCTTTCCGCTCACGAAAAAGATAAATCTCGTGCAGATTGGACAAAGCAGCTCAACGAACCTCTCGAGGTTGTGGATCCCGAGATCGCTGACATAATTGAACTCGAGAAAGCGCGCCAATGGAAGGGCTTCGAACTTATTCCTTCCGAAAATTTCACGTCGCTGTCGGTGATGCAAGCCGTTGGATCGGTGATGACAAATAAATACAGCGAAGGATATCCAGGAGCTAGATACTATGGAGGAAATGAGTACATTGACATGGCTGAGACATTATGTCAGAAGCGTGCGCTTGAAGCTTTTCGGTTGGATCCAGCAAAATGGGGAGTCAACGTGCAATCATTATCCGGATCCCCTTCTAACTTTCAAGTTTACACTGCTTTATTGAAACCTCATGAGAGAATTATGGCCCTGGATCTTCCCCATGGCGGGCATTTATCGCATGGTTATCAGACTGACACCAAGAAGATATCAGCTGTATCAATATTCTTTGAAACAATGCCATACAGATTGAATGAGAGCACTGGTTATATCGATTATGACCAGTTGGAAAAAAGTGCAGCACTTTTTAGGCCAAAATTAATAGTTGCTGGTGCTAGTGCTTATGCTCGCCTTTATGATTATGCACGTGTTCGCAAGGTATGTGATAAGCAGAAGGCAGTTCTGTTGGCTGATATGGCACATATCAGTGGATTGGTTGCTGCAGGTGTTATTCCTTCTCCTTTTGATTATGCAGATATCGTAACAACCACAACACATAAGTCACTTCGTGGACCACGTGGGGCTATGATTTTTTTCAGGAAGGGTGTGAAAGAAATAAACAAGCAAGGGAAGGAAGTGTTGTATGACTTTGAAGACAAAATAAATCAGGCTGTTTTTCCTGGACTTCAAGGTGGTCCACACAATCACACTATTACAGGCTTAGCTGTTGCACTGAAGCAGGCTATGACACCAGAATTCAAGAATTACCAAGAGCAAGTACTTAGCAACTGCGCAACATTTGCACAGAGTTTGTTAGAGAAAGGCTATGACCTTGTATCTGGTGGAACTGATAATCATTTAGTGTTAGTGAACTTGAGAAACAAGGGCATTGATGGTTCCAGGGTTGAGAAGGTACTAGAAGCAGTTCATATAGCTGCCAATAAAAATACCGTTCCAGGGGATGTATCTGCTATGGTTCCTGGAGGCATTCGGATGGGAACCCCTGCTCTCACATCTAGGGGATTTGTTGAGGAAGATTTTAAAAAAGTAGCTGAATACTTTGATGCAGCTGTCAAGTTAGCCTTAAAGATTAAGGAAAATACCAATGGTACAAAGTTGAAGGACTTTGTGGCAGCCATGCAATCAGATGAACAAATTCAATCTAAGATTGCTGATCTCCGTCTTAAAGTAGAGGAGTATGCTAAGCAGTTTCCCACAATTGGTTTTGAGAAAGAAACAATGAAGTATGGTAAGTGA 1536 0.429 MAMALRRLSSTINKPFSNATSIYRTSSSLSAHEKDKSRADWTKQLNEPLEVVDPEIADIIELEKARQWKGFELIPSENFTSLSVMQAVGSVMTNKYSEGYPGARYYGGNEYIDMAETLCQKRALEAFRLDPAKWGVNVQSLSGSPSNFQVYTALLKPHERIMALDLPHGGHLSHGYQTDTKKISAVSIFFETMPYRLNESTGYIDYDQLEKSAALFRPKLIVAGASAYARLYDYARVRKVCDKQKAVLLADMAHISGLVAAGVIPSPFDYADIVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVLYDFEDKINQAVFPGLQGGPHNHTITGLAVALKQAMTPEFKNYQEQVLSNCATFAQSLLEKGYDLVSGGTDNHLVLVNLRNKGIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFKKVAEYFDAAVKLALKIKENTNGTKLKDFVAAMQSDEQIQSKIADLRLKVEEYAKQFPTIGFEKETMKYGK 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01654 511 PANTHER SERINE HYDROXYMETHYLTRANSFERASE 34 504 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Viun8g01654 511 Pfam Serine hydroxymethyltransferase 49 446 IPR039429 -
Viun8g01654 511 Gene3D Aspartate Aminotransferase, domain 1 53 498 IPR015422 GO:0003824
Viun8g01654 511 FunFam Serine hydroxymethyltransferase 339 499 - -
Viun8g01654 511 Hamap Serine hydroxymethyltransferase [glyA]. 48 501 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Viun8g01654 511 SUPERFAMILY PLP-dependent transferases 37 502 IPR015424 -
Viun8g01654 511 ProSitePatterns Serine hydroxymethyltransferase pyridoxal-phosphate attachment site. 272 288 IPR019798 GO:0030170
Viun8g01654 511 PIRSF SHMT 29 506 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
Viun8g01654 511 FunFam Serine hydroxymethyltransferase 78 351 - -
Viun8g01654 511 Coils Coil 476 496 - -
Viun8g01654 511 Gene3D - 78 351 IPR015421 GO:0003824
Viun8g01654 511 CDD SHMT 52 473 IPR001085 GO:0004372|GO:0019264|GO:0030170|GO:0035999
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01654 Viun-Chr8 27529444 27537669 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01654 K00600 - gmx:100816213 961.059
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01654 8 27529444 27537669 Viun8g01654 8 27529444 27537669 ECH