Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01636 ATGGAGAGTGATTGTCGTTCCAGCAACCAGCGATGCCTTGTTTTTTGGGTTCTGTTTTCCCTGTCAATGATGGTGGAATGGGAACTTTCAGTGTTATTTAACTGCCTCCCATGGTGGCCTCATCTGAAATCCATAGCAACTATCTTGCTGTTGATACCTTATGTTGGTGCAGCACCATGTGCCTACAAATTCCTAATTAGACCCTACTGTTCTTGGAGTCCATTTACAAAGATATCAAACATCTTCACTGAGAAGGACACAGATTCTAAATCAGATGAGGGTGGTAAACTTTTTGATGTCTCTGACCAGACAACTACATCAACTCAAATACTGGAAAAGGAACTTGTTGATTTCTCTGATCAGATAATTACGCCAAGTCAAATAAAAGAAACGAAACTTGAAGCATGTCAGGATGATAGTGCAGGTTGTCACAAAACTGAAAGCAGTTATTCAAGGCTAACTAGTAAAAAGCTAGTTCAGAAGGAATGGAGCTGTGCTTTATGTCAGATTAGTACTACCAGTGAAAATTGCCTGAGGGCACATCACAAAGGGAAGAAACATAAGAATAAGGAAAAAGAGCTAAGAGTAGAGTTCCATCAAACAAATAGCACATACATGTTATCCTCTACTCAGAAAAGAATCAAAGGGATGATTCTGATAAGGAATCTCAACCAAATTGCTAACATTCTCAATCCAGTTTCCAGATCCATAAGATGGTGTGAGTGGAGAAAGCCAGAGTTTGGATGGACAAAATTAAACACTGATGGTTCTATCAACAGAGACAGTGCCAGTTTTGGAGGGCTGCTTCGTGATTATAGGGGTGAACCAATATGTGCTTTTGTCTCTAAAATGCCTCAAGGAGATGTTTTCTTGGTTGAACTATGGGCAATTTGGAGAGGCCTTGTTCTTTGCTGGGGTCTTGGGATCAAAGCAATATGGGTGGAATCAGACTCCATGAGTGTTGTGAATACAGTTAATAGAAAACAACATTGTCCAAAAGCTCAGGACTATTTGAAACAAATTTGGAAACTATTGAAGAATTTTGATAAATATCAAATTTCTCACTCATGGCGTGAAACTAACCGAGCTGCAGATCATCTTGCTAAGATGGTTGTTTGGGGAAATGATGTGGTTTTGTGGCCTGTTGATTTTCCGCCTACCCTTTGCAGTATCATTGAAGATGATGCCAGAGGAAAGAAATACCTAAGAAGATGA 1215 0.3967 MESDCRSSNQRCLVFWVLFSLSMMVEWELSVLFNCLPWWPHLKSIATILLLIPYVGAAPCAYKFLIRPYCSWSPFTKISNIFTEKDTDSKSDEGGKLFDVSDQTTTSTQILEKELVDFSDQIITPSQIKETKLEACQDDSAGCHKTESSYSRLTSKKLVQKEWSCALCQISTTSENCLRAHHKGKKHKNKEKELRVEFHQTNSTYMLSSTQKRIKGMILIRNLNQIANILNPVSRSIRWCEWRKPEFGWTKLNTDGSINRDSASFGGLLRDYRGEPICAFVSKMPQGDVFLVELWAIWRGLVLCWGLGIKAIWVESDSMSVVNTVNRKQHCPKAQDYLKQIWKLLKNFDKYQISHSWRETNRAADHLAKMVVWGNDVVLWPVDFPPTLCSIIEDDARGKKYLRR 404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01636 404 CDD RNase_H_like 252 369 IPR044730 -
Viun8g01636 404 Pfam TB2/DP1, HVA22 family 5 69 IPR004345 -
Viun8g01636 404 SMART ZnF_U1_5 160 194 IPR003604 GO:0003676|GO:0008270
Viun8g01636 404 Gene3D Classic Zinc Finger 151 201 - -
Viun8g01636 404 PANTHER OS05G0353850 PROTEIN 229 395 - -
Viun8g01636 404 SUPERFAMILY Ribonuclease H-like 249 378 IPR012337 -
Viun8g01636 404 Pfam Zinc-finger of C2H2 type 163 187 - -
Viun8g01636 404 SUPERFAMILY beta-beta-alpha zinc fingers 155 197 IPR036236 -
Viun8g01636 404 Gene3D - 249 372 IPR036397 GO:0003676
Viun8g01636 404 Pfam Reverse transcriptase-like 253 370 IPR002156 GO:0003676|GO:0004523
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01636 Viun-Chr8 27299997 27303069 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01636 241 369 Glycoside Hydrolase AT2G33160 27.612 3.02e-07 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01636 - - lang:109359207 484.567
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01636 8 27299997 27303069 Viun8g01636 8 27299997 27303069 ECH