Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01597 ATGCGTGTCACCATCGATCTAGGGTTTCGGAGCCTGGTCCTCGTCGCGGTGGTCTGCCTCGTCTTGCCGGCGATCAGCTTCGTGCTCCGTCGCAGGTGGCGGCGCGCGGAGGCCAGGGCGGAGGAGATCAAGCGGCTCCTTGTTCTCGCCGAGGAGGAGACTGTTAGGGCCGAGACCGAGGCTTCGTATTACCGCTACGGCGCCGTTTCGGTCCCGAAGAACAAAGTATGCGCCGTGTGTTTCTCTCCCACCACTACACGTTGCGCGAGGTGCAAAGCGGTTCACTACTGTTCTGGAAAGTGCCAAATAGTTCATTGGCGTCAAGGTCACAAAGAAGAATGCCATCCAGCCATCGCAACTTGCCAGACTGATGACTTAGTTAGTGATCTTAGAAAGAATGTGGCAGATCCTGACTATCGCAGAATCCATGAACATAGTTCTCAGACTGAAAGCACAGAGTATGCAACGGCATCTGAGGATCACTTGTCTGAAAAGAGCAGTTCTAATATTTCAAGAGCAAAGGATGATAGTGCAAGAGATGAGTCTCTTCAAGAGGGAAATGTTACAGGCTCTAATTCAGAATTATCCAGTAATTCATTTTCTGGATTTTCAGCTTCCACTGGTGCCAGTGAATCTTCTGATGATTCTTCTGTCTGTGAGAGTGTCATCTCAAATGAGCACGAGAGATCTGAGGGACATATTTTTGTGGATCACACCCATGACACTTCTGATACCACTTCAAGTCATAACGACATTGATGAATCCGTTCCATTATCACCTAAGTTTGTTAGTTTGGTCGATTCGGTAGATGATTATCCAGCAATGCATAAATTATATCAAACTACACCTGGTTTGGGCAAAGAAGAGAGTAAGCTCACTTCATCAGATGGCAGTTCTGGTTTGCATATGCGGAAAGGGTCAACAATTGAGCCTTCCACAGTGTCTTCTGGATTCTGGAATGAAACACTTGATTCAACAAGGTTAAAAGATGACTCAAATAGTGACCATCTTCCATCCCAGGGTGATTCTTTTCCAAAATCAGTTGAGAACAATATGCCAGGATCATCATCTTCAGAGAAAAATGTAGTTGATTCTTCAGGTTGTGCTGATGCTGTGAGCATCCATAATTTGCAAACAGTTGGTTCTAGGGTATCAAATCATGTTATCAACCCTACTAGCACCTTGGAGTTAGCTGAAAGTAGAGGTCTGCCATGTGCAATTGCTGATACGAAGTTAGTTTCTAAAAAGGAAGAACATTCACGTTATAGTACACAATGTGGGAATAAGGGTATCCAGTCTGGCACTGTAACTTCATCTAGGGTTTGTAGCTCGCCAAAGTCTAAGAATGACCTGGAAACATCTGTCCAGAAAGTTTCTGACCAGTTTAGAGGATCAAAATCATCTAAACCTTTCCCATTAGCTGTTGGGAGTAATATCACCGGAAAATATAGTGACAAGGGTCATTTTCCATATGATTTGTTTGTCAAGCTTTTTAACTTGAACAGAGTGCAGTTGCAACCATTTGGTCTTATAAACTGTGGAAACAGCTGTTATGCTAATGCTGTACTCCAGTGCTTGGCTTTTACACCACCCCTGACTGCTTATTTACTTCAAGGACTTCATTCTAAATCATGTGCAAATAAAAAGTGGTGTTTCACCTGTGAGTTTGAAAGTTTGATTTTGAAGTCGAAAGACACAAAATCTCCCATTTCACCTGTGGGCTTACTCTCTCAACTACAGAATATTGGGAGTCAACTTGGTAATGGTAGAGAAGAAGATGCACATGAGTTTCTAAGGCTTGCTGTTGAGACAATGCAATCTGTTTGCCTTATGGATTCTGGGGATAAAACATCAGACTCATTAAGAGAGGAAACCAATTTAATGGGCCTAACTTTTGGAGGTTATCTTCAATCAAAGATAAAATGCATGAAGTGTGGAGGGAAATCTGAGCGTCAAGAAAGGATGATGGATCTGACTGTTGAGATAGATGGGGAGATAGCAACCCTGGAGGATGCCCTTCGACAGTTTACAACTGCTGAGACTCTGGATGGGGAAAACAAGTACAACTGTGTCAGGTGTAAGTCTTATGAGAAGGCCAAGAAGAGAATGACAGTTTTGGAGGCACCTAATGTTCTTACAATTGCATTAAAGAGATTTAAGTCAGGAAAATTTGGGAAGCTCAATAAACCTATCCAGTTTCCTGAAATACTTGACTTGGCACCTTTTATGAGTGGGACGAGTGATTTGGCTATATACAGGTTATATGGGGTAGTTGTTCACCTGGATAACATGAATGCTGCTTTTTCGGGTCACTATGTATGCTATGTGAAGAATTTTCAAAGCAGGTGGTTCAAGGTTGATGATAGCGTGGTGACATCTGTTGAATTGGAAAGCGTCTTGGCAAAAGGAGCTTACATGCTTTTTTATGCAAGGTGCTCACCTAGGGCCCCTAGATCAATCAGGAACAGTATAGTATCTTCAGATTTAAAAAGGAAACTCAATGGAAAAACTACCATAGTGAAAGGACGACTATCTACTGTTTCTGGTGCTGGAGTTAATTTGACTTGTGCAGATGGTTCACCTTCCTTGGATACTATGTATTCAAACTTTCTCCGCCAGAGAAGGATTTGGGAAGAAGATTCATCAAGTGATAATTCATCCCTTATCAGCAGCAATTCCGATGAAGGTTCTTGCAGTACAGATAGCACGAGTGATTCAACCAGCACGGATGACTTTGCTGGTTATATTTTTGGTGATTTTGGATGCGGCTCAGGCGGCACGTTTAGAAATTCAGACTCCAACATTTCCCCTGCATTGTCGTCTTCTCCCCACACTAGATATTTTCCCTCTTGTGATATTTGA 2862 0.4291 MRVTIDLGFRSLVLVAVVCLVLPAISFVLRRRWRRAEARAEEIKRLLVLAEEETVRAETEASYYRYGAVSVPKNKVCAVCFSPTTTRCARCKAVHYCSGKCQIVHWRQGHKEECHPAIATCQTDDLVSDLRKNVADPDYRRIHEHSSQTESTEYATASEDHLSEKSSSNISRAKDDSARDESLQEGNVTGSNSELSSNSFSGFSASTGASESSDDSSVCESVISNEHERSEGHIFVDHTHDTSDTTSSHNDIDESVPLSPKFVSLVDSVDDYPAMHKLYQTTPGLGKEESKLTSSDGSSGLHMRKGSTIEPSTVSSGFWNETLDSTRLKDDSNSDHLPSQGDSFPKSVENNMPGSSSSEKNVVDSSGCADAVSIHNLQTVGSRVSNHVINPTSTLELAESRGLPCAIADTKLVSKKEEHSRYSTQCGNKGIQSGTVTSSRVCSSPKSKNDLETSVQKVSDQFRGSKSSKPFPLAVGSNITGKYSDKGHFPYDLFVKLFNLNRVQLQPFGLINCGNSCYANAVLQCLAFTPPLTAYLLQGLHSKSCANKKWCFTCEFESLILKSKDTKSPISPVGLLSQLQNIGSQLGNGREEDAHEFLRLAVETMQSVCLMDSGDKTSDSLREETNLMGLTFGGYLQSKIKCMKCGGKSERQERMMDLTVEIDGEIATLEDALRQFTTAETLDGENKYNCVRCKSYEKAKKRMTVLEAPNVLTIALKRFKSGKFGKLNKPIQFPEILDLAPFMSGTSDLAIYRLYGVVVHLDNMNAAFSGHYVCYVKNFQSRWFKVDDSVVTSVELESVLAKGAYMLFYARCSPRAPRSIRNSIVSSDLKRKLNGKTTIVKGRLSTVSGAGVNLTCADGSPSLDTMYSNFLRQRRIWEEDSSSDNSSLISSNSDEGSCSTDSTSDSTSTDDFAGYIFGDFGCGSGGTFRNSDSNISPALSSSPHTRYFPSCDI 953
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01597 953 MobiDBLite consensus disorder prediction 934 953 - -
Viun8g01597 953 SUPERFAMILY HIT/MYND zinc finger-like 73 117 - -
Viun8g01597 953 MobiDBLite consensus disorder prediction 280 364 - -
Viun8g01597 953 Gene3D - 68 120 - -
Viun8g01597 953 MobiDBLite consensus disorder prediction 138 256 - -
Viun8g01597 953 FunFam Ubiquitin carboxyl-terminal hydrolase 15 502 820 - -
Viun8g01597 953 SUPERFAMILY Cysteine proteinases 505 814 IPR038765 -
Viun8g01597 953 MobiDBLite consensus disorder prediction 337 364 - -
Viun8g01597 953 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 508 812 IPR028889 -
Viun8g01597 953 Gene3D Cysteine proteinases 501 822 - -
Viun8g01597 953 MobiDBLite consensus disorder prediction 183 220 - -
Viun8g01597 953 FunFam Ubiquitin carboxyl-terminal hydrolase 15 68 118 - -
Viun8g01597 953 ProSitePatterns Zinc finger MYND-type signature. 77 114 IPR002893 -
Viun8g01597 953 MobiDBLite consensus disorder prediction 286 323 - -
Viun8g01597 953 ProSiteProfiles Zinc finger MYND-type profile. 77 114 IPR002893 -
Viun8g01597 953 MobiDBLite consensus disorder prediction 882 907 - -
Viun8g01597 953 Pfam Ubiquitin carboxyl-terminal hydrolase 508 809 IPR001394 GO:0004843|GO:0016579
Viun8g01597 953 MobiDBLite consensus disorder prediction 221 248 - -
Viun8g01597 953 Pfam MYND finger 77 114 IPR002893 -
Viun8g01597 953 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 509 524 IPR018200 GO:0004843|GO:0006511
Viun8g01597 953 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 196 815 - -
Viun8g01597 953 Coils Coil 33 60 - -
Viun8g01597 953 MobiDBLite consensus disorder prediction 157 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01597 Viun-Chr8 26793290 26805869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01597 489 830 Miscellaneous Gene Families AT4G31670 50.291 2.32e-120 379
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01597 K11855 - gmx:100782303 1343.56
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01597 8 26793290 26805869 Viun8g01597 8 26793290 26805869 ECH