Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01575 ATGAGAGAGAACCATCCATCCACAAACTCCGAGGACGACCACCGATCCTCCGTGCTGGATCTGGCGCGAGCGGAAATCACCGAATCCTCCACCTCCAAGACCCGAAACTACGGCGCCTTTCCGGATCCGGGTTCCGGGTCGGGTCCATCGGAGCCGCAGGCTCCCTTCCCGGACCAGGTGCTGGAGAACGTGCTGGAGAACGTCCTCCACTTCCTCTCCTCGCGCCGCGACCGCAACGCTGCCTCATTGGTGTGCCGCTCCTGGTACCGCGCGGAGGCCCTCACCCGATCCGAGCTCTTCATCGGGAACTGCTACTCGCTCTCCCCCGCCCGCGCCACCACGCGTTTCACGCGCGTCAAGTCCGTCACCGTGAAGGGTAAGCCGCGCTTCGCGGACTTCGATCTGATGCCGCACGATTGGGGGGCCCACTTCACGCCTTGGGCCGCTGCCCTGGCCCAGGCCTACCCCTGGCTGGAGAAGCTCCATCTGAAACGCATGACCGTCACCGACGACGACCTCGACCTCATCGCCGACTCCTTCTCGGGCTTCCGCGAACTCGTCCTCGTCTGCTGCGAGGGCTTCAGCACTCATGGTCTGGCCTCCGTCGCTGCCAAGTGCAGACTGCTGAGGGTGCTTGAGCTGGTCGAATCTGTTGTGGACTCTGAGGACGAGGAGGAGATTGCGGATTGGATTTCATGTTTCCCCGAGAACCAAACCAACATGGAGTCTCTTGTGTTTGATTGCGTTGAGTGTCCTATTAATTTCGAGGCTTTGGAGAGTTTGGTGGCTAGGTCGCCTCGTTTGAAGAAGCTTCGGTTGAACCGATATGTTTCCATGGCTCAGCTGCATCGTTTGTTGCTTCGAGCCCCGCAGCTTACTCACCTTGGAACAGGCTCCTTCAGTGCTGCTGAGCCCGGGGTGGTCGGCGAGCTGGAACCGGATTACACGGCAGCGTTTGAGGCCTGCAGATCCTTGGTTTGCCTCTCTGGATTCAGGGAGATTTGGGCGGATTACCTTCCCGCGATTTATCCGGTCTGCGCCAATCTGACCTCGTTGAATTTGAGCTATGCCGATGTTAACGCGCAGCAGCTGAAGGCAGTTATTCGCCACTGTCATAAGCTACAGATATTCTGGGTACTTGATTCGATATGTGATGAAGGACTTCAGGCAGTAGCTGCTACTTGCAAGGACTTGCGGGAGCTTCGGGTTTTTCCTGTGGATGCAAGGGAGGATACTGAAGGGCCTGTCTCTGAGGTTGGGTTAGAAGCGATTTCGCAGGGTTGTAGGAAGTTGGAATCGATTTTGTATTTCTGCCAGAGGATGACTAATGCGGCTGTGGTGGCTATGTCAAAGAACTGCCCAGATCTTGTGGTGTTTCGTCTGTGTATTATTGGGCGGTACAGGCCGGATCCTGTGACTCAGGAACCCATGGATGAGGGTTTTGGTGCTATTGTTATGAATTGCAAGAAGCTCACTAGGCTAGCTGTGTCTGGTTTGTTGACTGATCGTGCTTTTGAGTACATTGGGAGGTATGGGAAATTGGTTAGGACACTGTCGGTTGCCTTTGCTGGGGACACCGACATGGGCCTTAAGTATGTGCTTGAAGGATGTCCTAATTTGCAAAAGCTTGAAATCAGGGATAGTCCTTTTGGGGATGGAGCTCTGCGATCTGGTTTGCATCATTACTACAACATGAGATTCCTCTGGATGTCGAGCTGCAAATTGACACGCCAAGCTTGTCAAGAGATTGCACAAGCATTGCCCAACCTGGTTTTGGAAGTGATCAGCAACAGTGTTGTGGAGAATGCAGGTGATGATATTGAGATATTGTACATGTATCGGTCACTTGATGGACCGCGGGATGATGCTCCAGGATTTGTTAACATTCTGCATTAG 1896 0.5438 MRENHPSTNSEDDHRSSVLDLARAEITESSTSKTRNYGAFPDPGSGSGPSEPQAPFPDQVLENVLENVLHFLSSRRDRNAASLVCRSWYRAEALTRSELFIGNCYSLSPARATTRFTRVKSVTVKGKPRFADFDLMPHDWGAHFTPWAAALAQAYPWLEKLHLKRMTVTDDDLDLIADSFSGFRELVLVCCEGFSTHGLASVAAKCRLLRVLELVESVVDSEDEEEIADWISCFPENQTNMESLVFDCVECPINFEALESLVARSPRLKKLRLNRYVSMAQLHRLLLRAPQLTHLGTGSFSAAEPGVVGELEPDYTAAFEACRSLVCLSGFREIWADYLPAIYPVCANLTSLNLSYADVNAQQLKAVIRHCHKLQIFWVLDSICDEGLQAVAATCKDLRELRVFPVDAREDTEGPVSEVGLEAISQGCRKLESILYFCQRMTNAAVVAMSKNCPDLVVFRLCIIGRYRPDPVTQEPMDEGFGAIVMNCKKLTRLAVSGLLTDRAFEYIGRYGKLVRTLSVAFAGDTDMGLKYVLEGCPNLQKLEIRDSPFGDGALRSGLHHYYNMRFLWMSSCKLTRQACQEIAQALPNLVLEVISNSVVENAGDDIEILYMYRSLDGPRDDAPGFVNILH 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01575 631 MobiDBLite consensus disorder prediction 23 38 - -
Viun8g01575 631 FunFam Transport inhibitor response 1 97 630 - -
Viun8g01575 631 SUPERFAMILY RNI-like 151 600 - -
Viun8g01575 631 CDD F-box_AtTIR1-like 58 96 - -
Viun8g01575 631 MobiDBLite consensus disorder prediction 1 21 - -
Viun8g01575 631 Gene3D Ribonuclease Inhibitor 98 630 IPR032675 -
Viun8g01575 631 Gene3D - 52 96 - -
Viun8g01575 631 PANTHER F-BOX/TPR REPEAT PROTEIN POF3 137 580 - -
Viun8g01575 631 Pfam F-box 58 97 IPR041567 -
Viun8g01575 631 SUPERFAMILY F-box domain 56 91 IPR036047 GO:0005515
Viun8g01575 631 FunFam Transport inhibitor response 1-like protein 51 96 - -
Viun8g01575 631 SMART LRR_CC_2 488 511 IPR006553 -
Viun8g01575 631 SMART LRR_CC_2 537 561 IPR006553 -
Viun8g01575 631 SMART LRR_CC_2 428 452 IPR006553 -
Viun8g01575 631 SMART LRR_CC_2 180 205 IPR006553 -
Viun8g01575 631 MobiDBLite consensus disorder prediction 1 57 - -
Viun8g01575 631 Pfam Transport inhibitor response 1 protein domain 118 163 IPR041101 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01575 Viun-Chr8 26331257 26334547 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01575 - - gmx:100807836 1090.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01575 8 26331257 26334547 Viun8g01575 8 26331257 26334547 ECH