Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01458 ATGAGTGTGGATCCAAAGAACGCGTCCACTATTGGCCAGGAGAAGATGTTAGCATCACCAGAACAGCAGGCATCGATCAATGAGGTGAGAAGGTTAATTGGGCCACAGTCTGGTAAGGCATCTATTTTTTGTTCTGATGCCTGCATCTCAAGGTATTTAAGGGCACGGAATTGGAATGTCAAGAAGGCAACTAAAATGTTGAAATTGACCCTGAAATGGAGAGAAGAATACAAACCCGAAGAAATCCGTTGGGAAGATATTGCTCATGAAGCAGAGACAGGAAAAATCTATAGATCAAACTATATTGACAAGCATGGGAGAACTGTCCTAGTAATGAGGCCTGGTCGACAGAACTCAAAGTCAACTAAAGGACAAATTAAATATTTGGTATACTGCATGGAGAATGCTATTTTTAATCTTCCACCAGAACAAGAACAAATGGTCTGGTTGATTGACTTCCAGGGTTTCAATATGTCACATATATCAATAAAGGTGACTCGTGAAACTGCCAATGTATTACAAGAACATTATCCTGAACGCCTGGGTCTGGCAATACTTTACAATGCACCCAAGTTCTTTGAACCATTTTTCACGATGGTAAAGCCACTACTAGAGCCTAAGACTTATAATAAAGTGAAGTTCGCATACTCGGATGATCAAAACACCAAGAAGATTATGGAGGATTTGTTTGACTTTGATCAACTTGAATCTGCATTTGGTGGGAATGATGATACAGGATTTGACATAAATAAATATGCTGATAGAATGAAAGAGGATGACAAAAAGATTCCTGCTTTCTGGACTAGGGAAAACAATCCGTCATCAGTTCCAACAGATATTCCTCCTTTAGATTCTACTAGGTTAGACTCAAATACTGATGATGGTTCGGACAATGAGAAACTAGACTCTTCCACTGACCTCGTGGTGGACACTGGTATCATTAACCCGAACCAGAAAAGTTTGGTTAATGAAGGAGAAAGAAATGGCAGTGCAGATTAG 999 0.3974 MSVDPKNASTIGQEKMLASPEQQASINEVRRLIGPQSGKASIFCSDACISRYLRARNWNVKKATKMLKLTLKWREEYKPEEIRWEDIAHEAETGKIYRSNYIDKHGRTVLVMRPGRQNSKSTKGQIKYLVYCMENAIFNLPPEQEQMVWLIDFQGFNMSHISIKVTRETANVLQEHYPERLGLAILYNAPKFFEPFFTMVKPLLEPKTYNKVKFAYSDDQNTKKIMEDLFDFDQLESAFGGNDDTGFDINKYADRMKEDDKKIPAFWTRENNPSSVPTDIPPLDSTRLDSNTDDGSDNEKLDSSTDLVVDTGIINPNQKSLVNEGERNGSAD 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01458 332 SUPERFAMILY CRAL/TRIO N-terminal domain 19 86 IPR036273 -
Viun8g01458 332 MobiDBLite consensus disorder prediction 1 22 - -
Viun8g01458 332 MobiDBLite consensus disorder prediction 290 304 - -
Viun8g01458 332 MobiDBLite consensus disorder prediction 308 332 - -
Viun8g01458 332 PANTHER GH16843P 10 272 - -
Viun8g01458 332 Gene3D - 3 272 IPR036865 -
Viun8g01458 332 MobiDBLite consensus disorder prediction 268 289 - -
Viun8g01458 332 Pfam CRAL/TRIO domain 93 241 IPR001251 -
Viun8g01458 332 CDD SEC14 92 242 IPR001251 -
Viun8g01458 332 SMART sec14_4 90 244 IPR001251 -
Viun8g01458 332 MobiDBLite consensus disorder prediction 267 332 - -
Viun8g01458 332 SUPERFAMILY CRAL/TRIO domain 84 262 IPR036865 -
Viun8g01458 332 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 84 247 IPR001251 -
Viun8g01458 332 FunFam Phosphatidylinositol transfer protein 3 5 276 - -
Viun8g01458 332 SMART CRAL_TRIO_N_2 45 70 IPR011074 -
Viun8g01458 332 Pfam CRAL/TRIO, N-terminal domain 45 68 IPR011074 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01458 Viun-Chr8 23777820 23783516 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01458 49 212 Acyl Lipid Metabolism Gene Families AT5G47730 28.022 3.53e-09 55.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01458 K26544 - gmx:100780151 592.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01458 8 23777820 23783516 Viun8g01458 8 23777820 23783516 ECH
Viun8g01458 8 23777820 23783516 Viun9g02547 9 34538997 34542255 PCT