Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01423 ATGTCTTATCAGCTGTCAAGTATTGTGTGCATGTCCCGTTCAATTTGGGTTCAACCAAGCACAAATCATAGCAGTTCCAAGTCTGACAGAGGGCAGAGAATTGAGTATCTCACAAAAATTCCTCGGAGTGTCAACTTGGAGAGCCTGCAGAATGGCTATTTGTTTCCTGAGATATCCATAAGAGAGTCTGAATATGCTCAAAGGAATCCACATGCAAGATTGATAAAACTTGGAATTGGAGATACCACACAGCCAATACCAGACATCATAACTTCAGCAATGGCTGAGCAAGCATTGGCTCTATCCACAGCACAAGGCTATAAGGGTTATGGACCTGAGCAAGGCAACAGGGAGCTAAGAAGGGCAATAGCAGAAACACTTTACCAAGGTATGCCAGTGAAAGAAAACGAGATTTTTGTGTCTGATGGAGCACAGTGTGATATTTCTCGCGTTCAGATGCTTCTGGACGCTAGTTTGTCAATAGCTCTGCAGGATCCAACTTTTCCGGGATACGCAGATTCGAGCGTGATTGTTGGTAGGGCTGGAAGGTTGAATGCAGGGAGCGGAAAGTACAAAAGGATTGTGTACATGAAGTGTGAACCTGAGAACAATTTCTTCCCAAACCTATCGAAAACTCCCAGAACTGACCTGATATTTTTTTGTTCTCCAAATAATCCAACTGGTAGTGCTGCTTCTCGGCAGCAACTTGAGCAACTTGTGGAGTTTGCAAAAACAAATGGGTCTATCATAATCTACGACTCTGCTTATGCTGCCTACATTTCAGATGAAAGCCCCAGATCAATTTTCGAAATTCCCGGAGCCAAAGAGGTGGCAATTGAAATTTCGTCATTTTCCAAGTTTGCTGGGTTCACTGGTGTGAGGCTAGGGTGGACAGTGGTGCCAGAAGAGTTGGTGTATGCAAATGGTTATCCTATGATAAGGGATTACGATCGCATTGTTTGCACTTGCTTCAATGGTGCATCGAACATTGTTCAAGCTGGGGGACTTGCATGTCTTTCTGAAGAGGGATTTGAGGCATTGAAAAGAACGATGGGGTACTACATGGAAAATGCGAAGATACTTGTTGAGACGTTTGAGTCAATGGGTAAAAAGGTGTATGGTGGAAAAAATGGGCCTTATGTGTGGGTGCATTTCCCAGGGTTGAGTTCGTGGCAAGTGTTCAACAAAATTCTTGAGAGAGCAGCCATTGTCACTGTCCCTGGCATAGGGTTTGGGCCCGGCGGCGAGGGCTATGTCAGAGTCAGTGCCTTTGGTCACAGAGAATGTATATTGGAAGCTTCAAGGAGATTGACAAAACTCCTATTAAAATAA 1332 0.4429 MSYQLSSIVCMSRSIWVQPSTNHSSSKSDRGQRIEYLTKIPRSVNLESLQNGYLFPEISIRESEYAQRNPHARLIKLGIGDTTQPIPDIITSAMAEQALALSTAQGYKGYGPEQGNRELRRAIAETLYQGMPVKENEIFVSDGAQCDISRVQMLLDASLSIALQDPTFPGYADSSVIVGRAGRLNAGSGKYKRIVYMKCEPENNFFPNLSKTPRTDLIFFCSPNNPTGSAASRQQLEQLVEFAKTNGSIIIYDSAYAAYISDESPRSIFEIPGAKEVAIEISSFSKFAGFTGVRLGWTVVPEELVYANGYPMIRDYDRIVCTCFNGASNIVQAGGLACLSEEGFEALKRTMGYYMENAKILVETFESMGKKVYGGKNGPYVWVHFPGLSSWQVFNKILERAAIVTVPGIGFGPGGEGYVRVSAFGHRECILEASRRLTKLLLK 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01423 443 Gene3D - 84 341 IPR015421 GO:0003824
Viun8g01423 443 FunFam LL-diaminopimelate aminotransferase, chloroplastic 84 341 - -
Viun8g01423 443 NCBIfam LL-diaminopimelate aminotransferase 43 439 IPR019942 GO:0008483
Viun8g01423 443 Gene3D Aspartate Aminotransferase, domain 1 54 437 IPR015422 GO:0003824
Viun8g01423 443 Pfam Aminotransferase class I and II 74 423 IPR004839 GO:0009058|GO:0030170
Viun8g01423 443 SUPERFAMILY PLP-dependent transferases 53 437 IPR015424 -
Viun8g01423 443 Hamap LL-diaminopimelate aminotransferase [dapL]. 41 440 IPR019942 GO:0008483
Viun8g01423 443 CDD AAT_like 75 437 - -
Viun8g01423 443 PANTHER AMINOTRANSFERASE 26 441 IPR019942 GO:0008483
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01423 Viun-Chr8 22946994 22949976 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01423 K10206 - pop:7495130 639.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01423 8 22946994 22949976 Viun8g01423 8 22946994 22949976 ECH