LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun8g01378	ATGAGGGCCATGGCCGAAGGATCCTTGGTAGAGAGGTCCGACGACGGCGAAAAGGAGAAGAGGAAGAAGCGCCGATCCAATCGTCGATCCAAGCAAAATACTTCCTCATCTACAATATCTGAAGTGAGTGAGGCCCAGGGAATGTTGCCAGATTCAGGGAAAATTGAAAAACCTACTCATGCATCCACTTCCTTGGAGGGTTCATTGAAGCAGATCAATGTGGGTTCTTCTAATGAGCAAGGATTATCCAATGCATCAAATATCGCTTTTACATCAATGCCCCCCATGCATATCAATGCGCAAGTGGAATCTGTTGATTTGCGAATTGTGCCCGTGTATGGTGGAGGAATTGATTCTAAATCATTTTCTGAGCCCGCTGGTTGCAGAGGGTCATCGGGAATTAATAAAAACAAGGACACAGTTCCTTGTGGTCCAATTCGGAATTGTGGCCAAAAATGTATTTTTAGTCCACACTTGTCTTTAGAGGCTGTTGAGAAGGCATTAGAGAAGGGCGATGTTTTTAAAGCTCTCTTTCATGTCAATGCTCACAATCGAGTTGAGGCCTACTGCAAAATTGACGGAATGCCAACTGATGTCCTCATTAGTGGGATTCCTGCCCAGAATAGAGCTGTGGAAGGTGATATTGTTGCAGTTAAGATTGATCCCTTGCCGTTGTGGACAAAAATGAAAGGACCAAATGGGCCTTGTAACAACACTTCAACACTGGAAGGTTGCAACCTTTCTACAGAAGATAATGATGTGGATGGTAAAGGGAAACATAAGGTAGATGCTGATCATTGGTCTGGCCTTTGCGGAAGCTATCCTGGTCAAAACGAGGATGCTGATCAACAATCCATCTCATATAAAAATGATTCTTTGACTGGAAAAGGAATTGTCTGCGATGATAATACCCCCCAGGGTTCTACTAATCATTTAGATCTACTTGGAGGAGCCAACCATGGCAGCATTAATGGACATCACCATGCTACTCCTGATTCCTTAAAGAGCAATTCTTGTAGTGGACACATTGAAGTAGTTAATGCCGTGGAAAATATGTGTATGTTGGTTAATTCTGTCCCTTCAAAAAGACCAACTGGCAGGGTGGTCTCTATTATCGAGAGATCTCCTCGTCGGGAGGGTATTGTTGGTCATCTTAATGTGAAACAATGGGCTTCTTATAAGGAAATAACCAAAAGGGACGTCAAGAAGAATAGGAACTTGGTTTCTGATAATGATTACATCCAGCTAATACCAACTGATCCAAAGTTTCCTAATATGATGCTTCTTGTTAGAAAGTTACCTGAGTGCATTATGAAAAGGTTGAAAAGTGGTGACATGACAATTGAAATGGATCTGGTAGCTGCACAAATTGATGATTGGATTGAAGAAAATCCTTTTCCCGAGGCCCACATCTTGCACGTTTTTGGAAGAGGTGGCGAAATTCAGACCCATTTAGATGCAATTTTGTTTCAGAATGCAATCTGTTTTTCTGAATTTCCTCCAGAAGCTCTGTCCTGTCTGCCGTGTGTTCCTTGGGAGGTACCTCCGAAGGAAATTCAATGTAGAAAAGATCTCAGAAATTTGTGCTTATTTACTATTGATCCTTCAACTGCCACTGATCTGGATGATGCTCTGTCAATTGAGAAGTTACCTAATGGGAATTTTAGAGTAGGTGTCCACATTGCCGATGTATCATATTTTGTTTTACCTGACACAGCCTTAGATAGTGAGGCTCAGTCTAGGTCAACAAGTGTATATATGTTGCAAAGGAAGTTACCTATGTTGCCTCCATTATTATCAGAGAATATTGGGTCACTTAGTCCTGGAGTGGATCGACTCGCTCTTTCTATGCTCCTGGATGTGAATGGTGAGGGGGATGTTGTAGATCGTTGGATTGGTCGTGCTGTTATACACTCATGTTGTAAGCTTTCATATGACCATGCCCAGGATATCATTGACAGGGGTTTTGATTTTGAAGGTTTAAAGAATACTGAAGATGGCTATCCCAAAGTGTATGGTCATTTTGAATGGCCTGATGTTATTATGTCCTTGAAGAGTCTGTATGAAATTTCGAATGTCTTGAAACGCAAGAGGTTTACTGATGGGGCTCTACGGCTGGAAAACCCCAAGGTTGTTATCTTGTTTGATGAGAATGGAGTTCCTTATGATAGTAAGCTTTCCGAAAGAAAAGAATCAAATTTTCTTGTAGAGGAATATATGCTTTTGGCCAATACAGTTGCTGCTGAAGTCATATGTCGAGCTTATCCTGATGCTGCATTGTTACGGAGGCATCCTGAACCTAATATGCGAAAGATGAGAGAGTTTATGGCATTTTGTCAGAAGCATGGTTTAGAATTGAACACGACTTCCTCTGGTCAATTCCACTGGTCATTAGAGCAGATCAGGGAAAAGCTCAAGGGTGATCCTGTGCTTTACTATATACTTATTTCTTATGCTACTAAGCCCATGCAGTTGGCTTCTTACTTCTGTAGTGGAGATTTAAAGGATAGTGCAAATGAATGGGGTCATTATGCTTTGGCTGTCCCATTTTACACTCATTTCACATCACCTCTGCGTCGGTATCCAGATATTATTGTTCACAGGACATTACTTGCTACCATAGAGGCTGAGGATTTGTATATGAAGCATCAAAAGGCTTTGCATGTTCATAAGGAAATGGATATGGAGAAAAGATGTTTCACTGGTATCAATTTTGATAAAAGTGCTGCAGAATCCATCAAGGGTAGGGAAGCGCTATCAGCTGCAGCTGTGAAGTATAGTGTTCCAGGTGGTGAAATGCTTGCAAGTATTGCTGCTCATTGCAATGAGAGAAAGCTAGCTAGTAGAAATGTTAAGGATGCCTGTGATAAACTTTACATGTGGTTTATCCTGAAGAAAAAGGAGGTCTTATTGTCAGATGCTAGAATTATGGGACTTGGCCCAAGATTCATGTCAATTTACATTCAAAAGCTAGCTATTGAGCGACGCATATATTATGATGATGTGGAAGGCTTGAATGCAGAATGGCTTGAAACAACATCCACATTGGTGCTCAGCATGTCTACTACTAATAGGTGTACATTTAGGAGGGGCTGGTCTAACAAGTGGAGGGCGATTGAAGAAGTTGCACTGCTTTCTTGTCCATATAACCTGAAAATTACCACGGATAATTCTAACCAGAGTCATGCGGAAACGGAAACTGAAATTGCCCCCTTAGTTTTTCCGCTCACAGTGCATGTTCTTTCAACAATTCCAGTGGCTCTTCATGCTGTTGGTGGTGATGATGGGCCCCTTGATATTGGAGTAAGACTCTACATGAGCTCTTATTTTGGGTGA	3336	0.4164	MRAMAEGSLVERSDDGEKEKRKKRRSNRRSKQNTSSSTISEVSEAQGMLPDSGKIEKPTHASTSLEGSLKQINVGSSNEQGLSNASNIAFTSMPPMHINAQVESVDLRIVPVYGGGIDSKSFSEPAGCRGSSGINKNKDTVPCGPIRNCGQKCIFSPHLSLEAVEKALEKGDVFKALFHVNAHNRVEAYCKIDGMPTDVLISGIPAQNRAVEGDIVAVKIDPLPLWTKMKGPNGPCNNTSTLEGCNLSTEDNDVDGKGKHKVDADHWSGLCGSYPGQNEDADQQSISYKNDSLTGKGIVCDDNTPQGSTNHLDLLGGANHGSINGHHHATPDSLKSNSCSGHIEVVNAVENMCMLVNSVPSKRPTGRVVSIIERSPRREGIVGHLNVKQWASYKEITKRDVKKNRNLVSDNDYIQLIPTDPKFPNMMLLVRKLPECIMKRLKSGDMTIEMDLVAAQIDDWIEENPFPEAHILHVFGRGGEIQTHLDAILFQNAICFSEFPPEALSCLPCVPWEVPPKEIQCRKDLRNLCLFTIDPSTATDLDDALSIEKLPNGNFRVGVHIADVSYFVLPDTALDSEAQSRSTSVYMLQRKLPMLPPLLSENIGSLSPGVDRLALSMLLDVNGEGDVVDRWIGRAVIHSCCKLSYDHAQDIIDRGFDFEGLKNTEDGYPKVYGHFEWPDVIMSLKSLYEISNVLKRKRFTDGALRLENPKVVILFDENGVPYDSKLSERKESNFLVEEYMLLANTVAAEVICRAYPDAALLRRHPEPNMRKMREFMAFCQKHGLELNTTSSGQFHWSLEQIREKLKGDPVLYYILISYATKPMQLASYFCSGDLKDSANEWGHYALAVPFYTHFTSPLRRYPDIIVHRTLLATIEAEDLYMKHQKALHVHKEMDMEKRCFTGINFDKSAAESIKGREALSAAAVKYSVPGGEMLASIAAHCNERKLASRNVKDACDKLYMWFILKKKEVLLSDARIMGLGPRFMSIYIQKLAIERRIYYDDVEGLNAEWLETTSTLVLSMSTTNRCTFRRGWSNKWRAIEEVALLSCPYNLKITTDNSNQSHAETETEIAPLVFPLTVHVLSTIPVALHAVGGDDGPLDIGVRLYMSSYFG	1111

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun8g01378	1111	ProSitePatterns	Ribonuclease II family signature.	843	867	IPR022966	-
	Viun8g01378	1111	FunFam	DIS3-like exonuclease 2	145	248	-	-
	Viun8g01378	1111	Pfam	RNB domain	522	874	IPR001900	GO:0003723\|GO:0004540
	Viun8g01378	1111	Gene3D	-	147	240	-	-
	Viun8g01378	1111	FunFam	DIS3-like exonuclease 2	398	480	-	-
	Viun8g01378	1111	Gene3D	-	397	480	-	-
	Viun8g01378	1111	SUPERFAMILY	Nucleic acid-binding proteins	365	494	IPR012340	-
	Viun8g01378	1111	Hamap	DIS3-like exonuclease 2 [DIS3L2].	18	1086	IPR028591	GO:0000175\|GO:0034427
	Viun8g01378	1111	SMART	RNB_2	522	876	IPR001900	GO:0003723\|GO:0004540
	Viun8g01378	1111	MobiDBLite	consensus disorder prediction	7	21	-	-
	Viun8g01378	1111	SUPERFAMILY	Nucleic acid-binding proteins	482	966	IPR012340	-
	Viun8g01378	1111	SUPERFAMILY	Nucleic acid-binding proteins	152	374	IPR012340	-
	Viun8g01378	1111	MobiDBLite	consensus disorder prediction	31	45	-	-
	Viun8g01378	1111	PANTHER	RIBONUCLEASE	22	1108	-	-
	Viun8g01378	1111	Pfam	Dis3-like cold-shock domain 2 (CSD2)	413	492	IPR041505	-
	Viun8g01378	1111	MobiDBLite	consensus disorder prediction	1	67	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun8g01378	Viun-Chr8	21385500	21391799	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun8g01378	K18758		-	gmx:100817387	1763.81

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun8g01378	8	21385500	21391799	Viun8g01378	8	21385500	21391799	ECH