Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01342 ATGGACGAATCCTCGTTGCAATTCGTCTCCGAAATAGGAAGACACCTTGCTCAACGAACTCGTCCCAGCAAGGACTTCATCGTCAAATCCCTCAGAAAAGCTGCAAATGCTTTGTCTCAGATAAAACAGTCTCCTCAACCGCGGACGGCCAAGGAATTACAAGCTGCAAAGAAACAAGAAGATGCTTTGAAGCCCCTGTCAAATGCTGTGGTTTGTGGTGGTCTGCTTCAACATGCAGATAAGGAAGTTAGACTTCTGGTTGCCATGTGTGTCACCGAGCTCTTTAGACTTATGGCACCTGAACCGCCTTTTGAAGACGAGCATTTGAGGGATGTATTTAAACTCATCATTAATTTGTTTGAGGATCTGGCTGATACTGCAAGTCCATTCTTTTCAAAAAGGGTTAAAGTATTGGAGATAATGGCTCAACTAAAGTGTTGTGTGATAATGCTGGAGATTAACTGCCTTGACCTAGTTCTTGAGATGTTCAATATTTTCTTCTCAGTTGTGAGAGATGAACAGCTTCTCATTAGTGCCATGACTTCTATAATGATAAACATTTTGTATGAGAGTGAAGAGGCTTTTCAGCAACTATTAGGAGTGGTTTTACTAAATCTTGTTAAGCAAAAAGGGGATGGAAATTTTGCTGCTGAAAACCTTGCTGCATCAGTCATCAAAACTTGTGCGCAAGAGGATGAGCTAAACCTCCTAGCTTGTGGGTTTCTAGTTTCTTGTATACACGACAGAGATGCTATGGGCAGTGGGCTTAAACAATATTACTATGAAATTTTCTCAAAAGTTTTCGAGTGTGCGCCTGAGATGCTTCTGTCTGTCATCCCAAGTTTAATTAAAGAATTATCGGCTGATGAGGTTGATGTTCGGATAAAAGCTGTGAATTTGGTGGGGAAGCTTTTTGCACTTCAACATCGTGTTGCTCAGAAGTATCCTGATCTTTTTGTGGAGTTTTTGAAAAGATTTTCTGATAAATCTGTGGATGTTAGGATTAGTGCTCTACAATGTGCTAAAGTTTTCTATTTAGCAAATCCCTATGATGGCACAGAATCACGTGAAATTATGACTTCTGTTGAAGATAGATTATTAGACTCTGATGAACAAGTGAGAAAGCAAGCAGTGTTTGTTGCCTGTGATATTTTTAGTTCAAACCTGAAACTTGTTTCATCCAAATTACTATCTCATGTTTCTGAAAGACTCCGGGATATAAAGATAACTGTTAGAAAGAGTGCCTTGCAAAAGTTGGTAAGGGTATATCGTGATTACTGCAAGAAATGTTACGAAGGTAGCATGAAAATTAGTAATCACTTTGAAGAGATTCCTTGTAAAATTATGTTGCTGTGCTATGATAAAGATTGTAAGGAGTTCAGGTTCCAGAACTTGGAATTTGTTCTTGCTGATGATCTATTCCCAGAAGATCTTCCTATTGAAGAAAGGACAAACCATTGGATACACATGTTTTCTCTTTTCAATTTTCCTCATGAAAAGGCGTTCAATACTATTTTGGCTCAAAAGAGAAGGTTCCAAAATGAAATGAAAAACTATTTGGCTACGAAGAAGAAAATGAAGGATATTTGTCTTGAAGAAATGCAGAAGAAGATTGATAGCATGTTTACAAAAATGGCAGCATTCTTCCCGGATTCTCACAAAGCTGAAGAGTGTCTGCATAAGTTAAACCAAATTAAAGATAATAGTGTGTTTCAGTTACTTGAAAAATTGTTGGAGGAACAAGCCTTCACCACGATTGGGCAAACTATGAAAGATAAACATCTGGCAATGATTGGAGACAGCAATCCAACTTACGAGTTTTTACGTCCACTATTCTCCAAATGTTCATCCAACATTTTCAGCTCAGAGCATGTCAGATGCATCTTAGATTATCTTACCAATAATGAAAATGAAAATAGGACTTTGGAGGATTCTTCTGCAAATTTTCTGCTGGCTATTGTTCGATATTTCCCTTCTATGCTGAAAGGCTCGGAAAAGCAGTTCTTATTGTTGTTGGAACAGAAAAGTCCTGTTAATGACAAGCTGATTGAAGTTATGGCAAAGGCAGGCTGTCATATGTCTTTCAATCATAGTGATATTTATCCATTTTTAAGGGGAATTTGCTTGGAAGGAACACGCGGACAGGCTAAATTTGCGGGGTCTGCAATTGTTGCTTTATGCTCCGAACAGTCACTTTTTAGAAAGTTGTTTGAGGAGCTAATTGATTCCTTATATAGTGAGCGGAATGTCCCTACTATTTTGCAATCTTTGGGATGCATTACACAATATGTTTCCAATTTTGAAACTCAAGTTGAAGAGATCACGTCATATATATTCCAGAAGATCATTCAAATGGAGCATTTGGATGATGGTCATTGTGCGACATCCTTTCATGATACTGCTCAATGTAGTGATTTTTGTCAGTTAAAGATTTATTGGCTGAAAGCTCTTGTGAAGATTTCTTTGCATTATGAAGGGAGTCATGTTGAGCGTAGTATTAATGGATTGATGGAAATTTTGTCAAGAATGCTACGAGAAAGTGATTATTTCGTCAATACAACTGCTAGCTCCTGTGAAAATGATAAGGCTCATATTAAATTAGCTGCTGCAAAAGCAATCCTGCGCCTTGCTAGAAAGTGGGATTTACATATTACTCCTCAGACTTTTCAGTTTTGTATATTGATTGCAAAGGACTCCTCTTTGTTTGTTAGGGGCACATTTCTTCGTAAGATCCAAAAGTTGTTGAAGGAGCATAAACTACCAATGAGATTTGCATGTGCTTTTGCTTTGGCAGCAACAAATGGCACCGGCGATCAGCAATATCAGACCTACAAGTATATGGCAGAGTTTATAAGGGATTACACTATATCAGCCCGTAAACGAGAAACTTCTTCTGTTCAAGGAGTCATCATTGATTGCCCAGCATATGTTTTGGTCTTCTTGATTCATGTGCTTTCTCGGAATAATGAATTTCCATTTGAAGTCTGTCCAGACGAAAAAATTTATGCTGATATTTGCAGTCCACTTTTCTTTATCCTGCAGGCATTAGTTGATATCAATATTGTTGATGGTGACTTGGACATTGTTGATGATGCTATCCTGCATATAGTTAGTATTTTTCGAGCAATCAGAAAGGTTGAGGATGGTGTTGATGCACAGATGACAACTAAGCTGCATATGCTGGCTGAAATTGGGATATTTATATTAAATGAATTAAGCCACGGAGGAATATCCAAATTGCAAACACCTGGACAAATTTTATTGCCTTCATCATTATATAGAACTAGTTCAAAATGTCCGACGTCATGTTTTGATGAAAATTTTCTAAGTAGAATTTTCCAAGCACTTAAGGAATTTACGTTGGCTCATCCACAAGCTCAAAAGTGA 3387 0.3779 MDESSLQFVSEIGRHLAQRTRPSKDFIVKSLRKAANALSQIKQSPQPRTAKELQAAKKQEDALKPLSNAVVCGGLLQHADKEVRLLVAMCVTELFRLMAPEPPFEDEHLRDVFKLIINLFEDLADTASPFFSKRVKVLEIMAQLKCCVIMLEINCLDLVLEMFNIFFSVVRDEQLLISAMTSIMINILYESEEAFQQLLGVVLLNLVKQKGDGNFAAENLAASVIKTCAQEDELNLLACGFLVSCIHDRDAMGSGLKQYYYEIFSKVFECAPEMLLSVIPSLIKELSADEVDVRIKAVNLVGKLFALQHRVAQKYPDLFVEFLKRFSDKSVDVRISALQCAKVFYLANPYDGTESREIMTSVEDRLLDSDEQVRKQAVFVACDIFSSNLKLVSSKLLSHVSERLRDIKITVRKSALQKLVRVYRDYCKKCYEGSMKISNHFEEIPCKIMLLCYDKDCKEFRFQNLEFVLADDLFPEDLPIEERTNHWIHMFSLFNFPHEKAFNTILAQKRRFQNEMKNYLATKKKMKDICLEEMQKKIDSMFTKMAAFFPDSHKAEECLHKLNQIKDNSVFQLLEKLLEEQAFTTIGQTMKDKHLAMIGDSNPTYEFLRPLFSKCSSNIFSSEHVRCILDYLTNNENENRTLEDSSANFLLAIVRYFPSMLKGSEKQFLLLLEQKSPVNDKLIEVMAKAGCHMSFNHSDIYPFLRGICLEGTRGQAKFAGSAIVALCSEQSLFRKLFEELIDSLYSERNVPTILQSLGCITQYVSNFETQVEEITSYIFQKIIQMEHLDDGHCATSFHDTAQCSDFCQLKIYWLKALVKISLHYEGSHVERSINGLMEILSRMLRESDYFVNTTASSCENDKAHIKLAAAKAILRLARKWDLHITPQTFQFCILIAKDSSLFVRGTFLRKIQKLLKEHKLPMRFACAFALAATNGTGDQQYQTYKYMAEFIRDYTISARKRETSSVQGVIIDCPAYVLVFLIHVLSRNNEFPFEVCPDEKIYADICSPLFFILQALVDINIVDGDLDIVDDAILHIVSIFRAIRKVEDGVDAQMTTKLHMLAEIGIFILNELSHGGISKLQTPGQILLPSSLYRTSSKCPTSCFDENFLSRIFQALKEFTLAHPQAQK 1128
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01342 1128 Gene3D - 217 444 IPR011989 -
Viun8g01342 1128 Pfam Sister chromatid cohesion protein PDS5 protein 25 1094 - -
Viun8g01342 1128 CDD PDS5 27 658 - -
Viun8g01342 1128 SUPERFAMILY ARM repeat 192 935 IPR016024 -
Viun8g01342 1128 PANTHER ANDROGEN INDUCED INHIBITOR OF PROLIFERATION AS3 / PDS5-RELATED 9 1075 IPR039776 GO:0007064
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01342 Viun-Chr8 20399126 20430819 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01342 K11267 - gmx:100777822 1825.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01342 8 20399126 20430819 Viun8g01342 8 20399126 20430819 ECH