Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g01085 ATGCCACCTTCCCCTTCCTTCCCTTCGGAGAACCGAACCAAATGGCGGAAGAAGCGGAAGCGGGAATCCCACAAACGCCACTCCAAGCGTCACGACGAAGATGATGAAGACAATGATTCCGATGATGACCGTGACGACAACGACTCCGACGACCAGTTCCGCAGCCCTAACGCGCCTCCCAACACCGACTCCCGTGTCGAGATCGAGGTCGTCTCACGTGATGGAGTCCAGATTTCGCGCTTCCCGCCGGCGATCAGGCGGACTGTTACCCGTCCTCATGCGGCGGTCACGGCAATTGCGGCTCTGGAGTCCGGCAGGGGACACTCGCAGCATGGCATACCGGTTCTCGAGAATGTGTCTCACGGCCAGCTTCAGGCTTCCTCGACTGTTTCTGCTGATTGTCTAGGGGGTTTGAGCTTTGTCGCTGCCCTGCCTCCTGTTATGAAAGGCTCCGGCGTTGTTAAACGGTTTGGCACTAGGGTTCTAGTGGTCCCCATGCATTCAGATTGGTTTTCTCCAGCCTCAGTGCATCGACTTGAGAGACAAGCAGTTCCACATTTCTTCTCTGGAAAGTCACCAGATCATACGCCAGAGAAGTACATGGAATGTAGGAATTACATTGTTGCAAGATACATGGAGGACCCAGGGAAGAGGATTACAGTCCCTAGTTGCCAGGTTTTGTCTGTTGGTGTTGGTAATGAAGATTTAACTCGAATTGTGAGGTTCCTTGATCAATGGGGAATCATCAATTACTGTGCTGAGAACCCAAGGCGTGAGTATTTGGACAATGATACTTGCCTGACTGAGGACACTAGTGGTGCACTATGTGTGCCATCAGTGGCTTTAAGATCCATAGATAGTTTGATTGAGTTTGACAAGCCCAAGTGTAAATTCAAAGCAGATGAAGTTTATTCATGTCGAACAATGCACAATACAGATATTTCTGATTTGGATGACACAATAAGAGAGTATCTATCTGAAAACTATTGCCACTATTGTTCTCGATCTCTTCCTGTTGTATACTACCAATCACAGAAAGAGGTTGATATTTTACTCTGCACTGATTGCTTTCATGATGGGAGATTTGTTGCTGGTCATTCTAGTATAGATTTTATTACAGTGGATTCAACTACAGATTATGGGGATCTAGATGGGGATAATTGGACTGATCAAGAGACTTTATTGCTGCTTGAAGCAGTGGAAGTTTACAATGAGAATTGGAATGAAATTGCGGAGCATGTTGGTACCAAGTCGAAAGCACAATGCATTCTTCATTTTCTCCGTCTACCTGTAGAAGATGGAAAGTTAGAAAACATCAATGTATCAAGTCTGTCCTTGTCATCGAATATGAATAATCAAGAGGGTAATGGAAGATTGCATTGTTGCTCAAATGGGGATTCTGCAGGATCCATACATAACAACCAAGATTCTGATGACAGGCTTCCTTTCGCAAATTCTGGAAATCCAGTTATGGCACTGGTTGCCTTTTTAGCTTCTGCTGTTGGACCAAGAGTAGCTGCAACTTGTGCTCACGCAGCATTAGCTGCATTGTCGGGGAATAATTCAGGGAGTGTGACAGATATAGAAGCTTTGGAAAATGATAACAGGGTAAATTCAGAAAGCATGAATAATAGAGATGGTGGCCATCATGGAGTGGCTGCAAACTCAAGTCAGAAAAATGGGGACAAGTCAAAAGTACCTGGTTCATGTGCTCAAGATGAGGCTGGGTCGACTCTGCTGTCTGCTGAGAAAGTCAAAGATGCTGCCAAAGCAGGCCTCTCTGCTGCAGCAATGAAAGCTAAATTGTTTGCTGATCATGAAGAGCGTGAAATTCAGAGGCTATGCGCTAATATTGTTAATACTAAGTTGAAAAGATTGGAACTGAAGCTGAAGCAGTTTGCAGAAATTGAAACACAGTTGATGAAAGAATGTGAACAAGTTGAGAAGCTGAGGCTGAGGTTCGCTTCTGAGCGGTCTCATGTTGTTTCAGCACGTCTTGGAAATGGTGGAACCAATCCTCCAATGAATGTATCAGGTGTTGGTCCTTCGATGATTAACAATAATAGCAACAGTAGGCAGCAAATGATTTCTGCTTCTTCCTCTCAGCCTAGCATCTCAGGGTATGGCAACAGCCAACCAGTTCATCCACACATGTCCTTTGTCCCGCGGCCTTCAATGTTTGGATTAGGGCAAAGGTTGCCCCTGTCTATGATACAACAATCACAGGCTGTTTCTTCAAATTTGATGTTCAATGGCCCCAGTAATGTGCAGCAGCCTACTCCTAATCATTCGCTGTCGAGGCCTGTGTCAAGAACTAACTCTGGTTTAGGTTAA 2334 0.4554 MPPSPSFPSENRTKWRKKRKRESHKRHSKRHDEDDEDNDSDDDRDDNDSDDQFRSPNAPPNTDSRVEIEVVSRDGVQISRFPPAIRRTVTRPHAAVTAIAALESGRGHSQHGIPVLENVSHGQLQASSTVSADCLGGLSFVAALPPVMKGSGVVKRFGTRVLVVPMHSDWFSPASVHRLERQAVPHFFSGKSPDHTPEKYMECRNYIVARYMEDPGKRITVPSCQVLSVGVGNEDLTRIVRFLDQWGIINYCAENPRREYLDNDTCLTEDTSGALCVPSVALRSIDSLIEFDKPKCKFKADEVYSCRTMHNTDISDLDDTIREYLSENYCHYCSRSLPVVYYQSQKEVDILLCTDCFHDGRFVAGHSSIDFITVDSTTDYGDLDGDNWTDQETLLLLEAVEVYNENWNEIAEHVGTKSKAQCILHFLRLPVEDGKLENINVSSLSLSSNMNNQEGNGRLHCCSNGDSAGSIHNNQDSDDRLPFANSGNPVMALVAFLASAVGPRVAATCAHAALAALSGNNSGSVTDIEALENDNRVNSESMNNRDGGHHGVAANSSQKNGDKSKVPGSCAQDEAGSTLLSAEKVKDAAKAGLSAAAMKAKLFADHEEREIQRLCANIVNTKLKRLELKLKQFAEIETQLMKECEQVEKLRLRFASERSHVVSARLGNGGTNPPMNVSGVGPSMINNNSNSRQQMISASSSQPSISGYGNSQPVHPHMSFVPRPSMFGLGQRLPLSMIQQSQAVSSNLMFNGPSNVQQPTPNHSLSRPVSRTNSGLG 777
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g01085 777 MobiDBLite consensus disorder prediction 1 69 - -
Viun8g01085 777 SUPERFAMILY Homeodomain-like 385 438 IPR009057 -
Viun8g01085 777 MobiDBLite consensus disorder prediction 538 570 - -
Viun8g01085 777 ProSiteProfiles SANT domain profile. 383 434 IPR017884 -
Viun8g01085 777 Pfam SWIRM domain 165 251 IPR007526 GO:0005515
Viun8g01085 777 MobiDBLite consensus disorder prediction 748 777 - -
Viun8g01085 777 Gene3D - 384 434 - -
Viun8g01085 777 FunFam SWI/SNF complex subunit SMARCC2 isoform C 384 434 - -
Viun8g01085 777 Pfam SWIRM-associated region 1 591 664 IPR032451 -
Viun8g01085 777 CDD SANT 387 429 IPR001005 -
Viun8g01085 777 SMART sant 384 432 IPR001005 -
Viun8g01085 777 Coils Coil 623 643 - -
Viun8g01085 777 MobiDBLite consensus disorder prediction 538 565 - -
Viun8g01085 777 PANTHER SWI/SNF COMPLEX-RELATED 104 665 - -
Viun8g01085 777 ProSiteProfiles Myb-like domain profile. 380 430 IPR001005 -
Viun8g01085 777 ProSiteProfiles SWIRM domain profile. 162 260 IPR007526 GO:0005515
Viun8g01085 777 Pfam Myb-like DNA-binding domain 387 429 IPR001005 -
Viun8g01085 777 Gene3D - 168 255 IPR036388 -
Viun8g01085 777 ProSiteProfiles Zinc finger ZZ-type profile. 325 379 IPR000433 GO:0008270
Viun8g01085 777 SUPERFAMILY Homeodomain-like 161 259 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g01085 Viun-Chr8 13343792 13349479 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g01085 330 426 EF-hand Containing Proteins AT3G07740 33.333 5.13e-10 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g01085 K11649 - gmx:732600 1227.62
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g01085 8 13343792 13349479 Viun8g01085 8 13343792 13349479 ECH