Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00972 ATGCAGATACGACCCTGCAACTCCATCACCACTCAAACACTTGTTCCACGCGCATATACAACAAGCTCATGCCACCGCCACCTCTTGCCACCGCCCAAAGTCGCCGTCTCCGCCGTCTCCGCCGTCTCCACGGCGCCGCTGAAGGCTCGGAGGACCCACTCAATGCCTCCGGAGAAAATGGAGGTTTTCAAGTCGTTGGAGGGGTGGGCGTCGGAGTGGGTCCTACCACTGCTGAAGCCCGTGGAACGATGCTGGCAGCCGCAGAACTTGGTCCCTGACTCGTCACTGCCGTTCGAAGAGTTCAGCGAGGAGGTGAAAGCCCTTCGCGAACGCACCAAGGAGCTTCCCGACGAGTACTTCGTGGTGTTGGTGGGTGACATGGTCACCGAAGACGCGCTTCCCACTTACCAGACCATGATCAACAACCTCGACGGCGTGAAAGACGACTGCGGAACCAGTCCAAGCCCGTGGGCCGTGTGGACCCGGGCCTGGACCGCAGAAGAAAACCGCCACGGAGATCTGCTCAGAACTTATTTATACCTCTCCGGTCGCGTCGACATGGCTAAGGTTGAGAAAACTGTGCATTACCTCATCGGAGCCGGCATGGACCCTGGAACAGAGAACAATCCTTATTTAGGGTTTGTGTACACTTCCTTCCAAGAGCGAGCAACTTTCGTGGCGCATGGGAACACTGCTCGGCTTGCGAAGGAAGGGGGTGATCCAGTGCTTGCGCGCATATGTGGAACCATTGCTGCGGATGAGAAGCGGCATGAGAATGCATATTCTAGAATCGTGGAGAAGCTTCTAGAAGTGGACCCCACTGGGGCGATGGTTGCAATAGGAAACATGATGGAGAAGAAGATCACAATGCCGGCGCATCTTATGTACGATGGGCACGACCCTAAGCTATTCGAGCATTTCTCTGCAGTGGCCCAGCGAATGGGCGTGTACACGGCCAATGATTATGCAGATATCTTGGAGTTTCTGGTTGGACGGTGGAGATTGGAGAAGCTTGAAGGTTTGTCGGGGGAAGGAAAGCGGGCACAGGATTACGTGTGTGGGTTAGCGCCTAGGATTAGGAGGTTGCAAGAACGCGCTGATGAGCGAGCGCGTAAGATGAAGCCGCAGAGTGTGAAGTTCAGTTGGGTGTTCAATAGGGAACTGCTTTTGTGA 1173 0.5533 MQIRPCNSITTQTLVPRAYTTSSCHRHLLPPPKVAVSAVSAVSTAPLKARRTHSMPPEKMEVFKSLEGWASEWVLPLLKPVERCWQPQNLVPDSSLPFEEFSEEVKALRERTKELPDEYFVVLVGDMVTEDALPTYQTMINNLDGVKDDCGTSPSPWAVWTRAWTAEENRHGDLLRTYLYLSGRVDMAKVEKTVHYLIGAGMDPGTENNPYLGFVYTSFQERATFVAHGNTARLAKEGGDPVLARICGTIAADEKRHENAYSRIVEKLLEVDPTGAMVAIGNMMEKKITMPAHLMYDGHDPKLFEHFSAVAQRMGVYTANDYADILEFLVGRWRLEKLEGLSGEGKRAQDYVCGLAPRIRRLQERADERARKMKPQSVKFSWVFNRELLL 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00972 390 FunFam Stearoyl-[acyl-carrier-protein] 9-desaturase, chloroplastic 42 390 - -
Viun8g00972 390 PANTHER ACYL- ACYL-CARRIER-PROTEIN DESATURASE-RELATED 42 388 IPR005067 GO:0006631|GO:0045300
Viun8g00972 390 SUPERFAMILY Ferritin-like 47 389 IPR009078 -
Viun8g00972 390 PIRSF Dlt9_acylACP_des 11 390 IPR005067 GO:0006631|GO:0045300
Viun8g00972 390 Pfam Fatty acid desaturase 58 384 IPR005067 GO:0006631|GO:0045300
Viun8g00972 390 Gene3D Ribonucleotide Reductase, subunit A 43 390 IPR012348 GO:0016491
Viun8g00972 390 CDD Acyl_ACP_Desat 58 366 IPR005067 GO:0006631|GO:0045300
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00972 Viun-Chr8 10639068 10640826 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00972 8 388 Acyl Lipid Metabolism Gene Families AT1G43800 72.468 0.0 580
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00972 K03921 - gmx:100037478 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00972 8 10639068 10640826 Viun8g00972 8 10639068 10640826 ECH