Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00921 ATGTCTCGTGTGTATGTTGGTAACTTGGATTCACGAGTGACAGAGAGGGATCTTGAAGACGAATTCCGTGTTTTCGGAGTTATTCGGAGTGTTTGGGTTGCACGAAGGCCACCTGGTTATGCTTTTATTGACTTTGATGATAGGAGAGATGCTCAGGATGCTATACGTGAATTAGATGGCAAGAATGGTTGGAGGGTTGAGCTTTCTCACAATTCTAGGGGTGGAGGTGGTGGCCGCGGTGGCCGTTCTGGTGGTTCTGATTTGAAATGTTACGAGTGTGGTGAACCTGGTCATTTTGCCCGTGAATGTCGCTTACGTGGTGGATCAGGAAGACGCCGTAGCCGCAGCCCACCCCGATTTCGCAGGAGCCCTAGCTATGGGCGAAGTCCTCGTGGGCGATCTCCTAGACGCCGCAGCTTATCACCTCGTGGACGTAGCTACAGCAGGTCACCTCCTTATCGTGGACGTGAGGAGGTTCCATATGCTAATGGAAATGGCCTTAGGGAACGTCGCAGAAGCAGAAGTTGA 528 0.5152 MSRVYVGNLDSRVTERDLEDEFRVFGVIRSVWVARRPPGYAFIDFDDRRDAQDAIRELDGKNGWRVELSHNSRGGGGGRGGRSGGSDLKCYECGEPGHFARECRLRGGSGRRRSRSPPRFRRSPSYGRSPRGRSPRRRSLSPRGRSYSRSPPYRGREEVPYANGNGLRERRRSRS 175
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00921 175 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 2 155 - -
Viun8g00921 175 SMART rrm1_1 3 69 IPR000504 GO:0003723
Viun8g00921 175 Pfam Zinc knuckle 89 104 IPR001878 GO:0003676|GO:0008270
Viun8g00921 175 CDD RRM_SRSF3_like 3 71 - -
Viun8g00921 175 Gene3D - 77 139 - -
Viun8g00921 175 MobiDBLite consensus disorder prediction 66 88 - -
Viun8g00921 175 FunFam Serine/arginine-rich splicing factor 7 2 69 - -
Viun8g00921 175 ProSiteProfiles Zinc finger CCHC-type profile. 89 104 IPR001878 GO:0003676|GO:0008270
Viun8g00921 175 SUPERFAMILY RNA-binding domain, RBD 3 84 IPR035979 GO:0003676
Viun8g00921 175 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 2 73 IPR000504 GO:0003723
Viun8g00921 175 SMART c2hcfinal6 89 105 IPR001878 GO:0003676|GO:0008270
Viun8g00921 175 MobiDBLite consensus disorder prediction 102 175 - -
Viun8g00921 175 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 4 61 IPR000504 GO:0003723
Viun8g00921 175 SUPERFAMILY Retrovirus zinc finger-like domains 82 105 IPR036875 GO:0003676|GO:0008270
Viun8g00921 175 Gene3D - 2 69 IPR012677 -
Viun8g00921 175 FunFam Serine/arginine-rich splicing factor RSZ22A 86 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00921 Viun-Chr8 9444260 9447573 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00921 K12896 - gmx:100790689 248.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00921 8 9444260 9447573 Viun8g00921 8 9444260 9447573 ECH