Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00873 ATGGCTCCTCCCAGAGGTCGTGGTGGTGGTGGTGGAGGTTTCAGGGGTGGTAGGGGAGACAGAGGTAGAGGAAGGGGCGGTGGTGGAAGAGGAGGAGACAGGGGTACACCCTTTAAAGCCAGAGGTGGCGGGAGAGGAGGAGGCAGAGGAGGTGGCCGTGGAGGAGGTAGAGGTGGTGGCCGTGGTGGAATGAAGGGAGGGAGTAAGGTCGTTGTTCAACCACATAGACACGAGGGTATTTTTATTGCCAAGGGTAAAGAAGACGCCCTTGTCACTAAGAATCTGGTTCCTGGTGAAGCTGTTTATAATGAGAAAAGGATAACTGTTCAGAACGAAGATGGTTCCAAAGAAGAATACAGAATTTGGAATCCTTTCCGCTCGAAGTTGGCTGCTGCCATCCTTGGTGGAGTTGATAACATATGGATTAAACCTGGTGCCAGAGTCCTTTACTTAGGAGCTGCTTCTGGCACAACTGTTTCTCATGTTTCTGACATTGTTGGCCCCACAGGAGTCGTGTATGCAGTTGAATTTTCCCATAGAAGTGGACGTGATTTGGTCAATATGGCAAAGAAGCGTACTAATGTTATACCCATTATTGAAGATGCTAGACATCCCGCTAAGTACAGGATGTTAGTTGGTATGGTTGATGTCATATTTTCTGATGTTGCCCAGCCTGATCAGGCAAGGATTTTGGGACTCAATGCTTCGTATTATCTCAAATCTGGAGGTCATTTTGTTATTTCAATCAAGGCTAACTGCATAGACTCAACAGTTCCTGCGGAGGCAGTGTTTGAAAGCGAAGTGAACAAGTTGAAGGCTGATCAATTCAAGCCATTCGAGCAAGTGACCCTTGAACCATTCGAGAGGGACCATGCTTGTGTTGTTGGTGGATACAGAATGCCTAAGAAGAAAAAGGACACAGCAGCGTAG 930 0.4753 MAPPRGRGGGGGGFRGGRGDRGRGRGGGGRGGDRGTPFKARGGGRGGGRGGGRGGGRGGGRGGMKGGSKVVVQPHRHEGIFIAKGKEDALVTKNLVPGEAVYNEKRITVQNEDGSKEEYRIWNPFRSKLAAAILGGVDNIWIKPGARVLYLGAASGTTVSHVSDIVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILGLNASYYLKSGGHFVISIKANCIDSTVPAEAVFESEVNKLKADQFKPFEQVTLEPFERDHACVVGGYRMPKKKKDTAA 309
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00873 309 PRINTS Fibrillarin signature 170 187 IPR000692 GO:0003723|GO:0006364|GO:0008168
Viun8g00873 309 PRINTS Fibrillarin signature 90 109 IPR000692 GO:0003723|GO:0006364|GO:0008168
Viun8g00873 309 PRINTS Fibrillarin signature 195 224 IPR000692 GO:0003723|GO:0006364|GO:0008168
Viun8g00873 309 PRINTS Fibrillarin signature 118 137 IPR000692 GO:0003723|GO:0006364|GO:0008168
Viun8g00873 309 PRINTS Fibrillarin signature 145 166 IPR000692 GO:0003723|GO:0006364|GO:0008168
Viun8g00873 309 PRINTS Fibrillarin signature 225 254 IPR000692 GO:0003723|GO:0006364|GO:0008168
Viun8g00873 309 PRINTS Fibrillarin signature 277 298 IPR000692 GO:0003723|GO:0006364|GO:0008168
Viun8g00873 309 MobiDBLite consensus disorder prediction 1 69 - -
Viun8g00873 309 Gene3D Phosphorylase Kinase; domain 1 67 122 - -
Viun8g00873 309 Gene3D Vaccinia Virus protein VP39 123 300 IPR029063 -
Viun8g00873 309 FunFam Fibrillarin like 1 67 122 - -
Viun8g00873 309 Pfam Fibrillarin 72 299 IPR000692 GO:0003723|GO:0006364|GO:0008168
Viun8g00873 309 PANTHER RRNA 2-O-METHYLTRANSFERASE FIBRILLARIN 6 304 - -
Viun8g00873 309 ProSitePatterns Fibrillarin signature. 170 184 IPR020813 GO:0003723|GO:0006364|GO:0008168
Viun8g00873 309 Hamap Fibrillarin-like rRNA/tRNA 2'-O-methyltransferase [flpA]. 86 299 IPR000692 GO:0003723|GO:0006364|GO:0008168
Viun8g00873 309 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 70 296 IPR029063 -
Viun8g00873 309 FunFam Fibrillarin like 1 123 300 - -
Viun8g00873 309 SMART Fibrillarin_2 72 300 IPR000692 GO:0003723|GO:0006364|GO:0008168
Viun8g00873 309 PIRSF Nop17p 39 302 IPR000692 GO:0003723|GO:0006364|GO:0008168
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00873 Viun-Chr8 8427095 8430357 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00873 K14563 - gmx:100814656 500.745