Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Viun8g00835 | ATGCTCTCTCGTTATCTCAAATCCCCTAATCCACTCTTCTCCCTCCGTTCATTACCCTGTACTCCAAACCCAATCTCAGTCCCAGACCCTATTCCTAACCTAAACCCTTCCTTCCGACCCTCCCCAGACCGTCTCTTCTCTTCTTCATGGCTATCCGAACCGGGAAATCCAATCATCCAATGGCCATCACTACCAAAACCAAACCCTCATCCGAATCCCAACGCCAACCCTAACCCAACTCCCGACCCTACCTCTCCGAACCTAAACGCATTCTCCCTCATTTCCAACCTCTTCACGGACCCTTCCGTCTCGCCCGGTCCGGTCCTCCACGCCCAACTCGATCGCTCAGCCATCGAACCGGACCCGGCCCTCCTGCTCGCCGTCTTCGACCGCTTCGGCTCGTCTCCCAAGCTCTTACACTCGCTCTTCCTCTGGGCCCAGAAGCGACCCGGCTTCAGGCCCGACCCGAAGCTCCTTGACGCCGTCGTCAATGCACTCGCTAAGGCAAGGGAGTTTGACGCCGCATGGAAACTTGTTCTCGATCACGTCGGAGATGGGGAAGAAGAAAACGAAAGCTTGGTTTCCGTTAAGACCTTTGCCATAATGATTCGACGCTATGCTCGAGCAGGTATGTCCAAACTTGCAATCAGAACTTATGAATTTGCTAAAGATAACAAGTCCATTGTGGATTCTGGCTCAGAAATGAGTTTGTTTGAGATATTGATAGATTCACTTTGTAAAGAAGGGTCAGTGAGGGAAGCTTCAGAGTATTTCCTTTGGAAAAAGGAGTTGGACTTAAGTTGGGTTCCTTCTATTCGGGTATATAACATAATGTTGAATGGATGGTTTCGATCGAGGAAACTGAAGCAGGGCGAGAGACTTTGGGAAGAGATGAAGAAGGAGAATGTGAGACCAAGTGTTGTGACATATGGTACCCTTGTGGAAGGATATTGCAGGATGCGCCGTGTCGAGAAAGCACTCGAAATGGTTGGTGATATGACCAGAGAAGGAATTGCACCAAATGCAATTGTGTACAACCCAATCATCGATGCACTAGCAGAAGCTGGAAGATTCAAAGAGGCTTTGGGTATGTTGGAACGATTCCATGTTTTGGAAATTGGTCCTACTGATTCAACGTATAATTCTCTAATAAAAGGGTTTTGTAAAGCTGCAGATCTTGTTGGTGCTAGTAAGATTCTTAAAATGATGATAAGCAGGGGTTTGATCCCAAGTCCCACTACCTATAACTACTTTTTTAGGTACTTTTCAAGATGTGGAAAAGTTGAGGAGGGGATGAACCTGTATGCAAAGTTGATTGAGTCTGGTTATACCCCAGATCGGTTAACTTACCATCTTTTGGTGAAGATGTTATGTGAAGAGGGGAAGTTAGACATGGCAGTTCGAGTTAGCAAGGAAATGAGGCATAATGGTTATGATATGGACTTGGCTACCAGTACCATGTTAATTCATCTGCTCTGCAAAATGCATAGGTTGGAAGAGGCTTTTGCTGAATTCGAGGACATGATAAGAAGAGGTATAGTTCCTCAGTATCTCACTTTCCAGAGAATGAAAGCTGAGTTAAAGAGACAAGGTATGACTGAAATGGCTCAAAAGCTTTGCAAGTTAATGTCTTCTGTTCCCTATTCTGGCAACTTGCCAAATACTTATGGTGGAGACAGAGAGGATGCTTTTACACGAAGAAAATCTATAATTCGGAAAGCTAAAGCATTTTCTGATATGCTGAAGGACTGTAAGGATCCGAGTGAACTTCGTCAGTATAGAAATTCATCAGAAAATGCTGTCTCAAGTGAAAAATATGTGATGAAGGATATTGAGGGAAAATGA | 1845 | 0.452 | MLSRYLKSPNPLFSLRSLPCTPNPISVPDPIPNLNPSFRPSPDRLFSSSWLSEPGNPIIQWPSLPKPNPHPNPNANPNPTPDPTSPNLNAFSLISNLFTDPSVSPGPVLHAQLDRSAIEPDPALLLAVFDRFGSSPKLLHSLFLWAQKRPGFRPDPKLLDAVVNALAKAREFDAAWKLVLDHVGDGEEENESLVSVKTFAIMIRRYARAGMSKLAIRTYEFAKDNKSIVDSGSEMSLFEILIDSLCKEGSVREASEYFLWKKELDLSWVPSIRVYNIMLNGWFRSRKLKQGERLWEEMKKENVRPSVVTYGTLVEGYCRMRRVEKALEMVGDMTREGIAPNAIVYNPIIDALAEAGRFKEALGMLERFHVLEIGPTDSTYNSLIKGFCKAADLVGASKILKMMISRGLIPSPTTYNYFFRYFSRCGKVEEGMNLYAKLIESGYTPDRLTYHLLVKMLCEEGKLDMAVRVSKEMRHNGYDMDLATSTMLIHLLCKMHRLEEAFAEFEDMIRRGIVPQYLTFQRMKAELKRQGMTEMAQKLCKLMSSVPYSGNLPNTYGGDREDAFTRRKSIIRKAKAFSDMLKDCKDPSELRQYRNSSENAVSSEKYVMKDIEGK | 614 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Viun8g00835 | 614 | MobiDBLite | consensus disorder prediction | 588 | 614 | - | - | |
| Viun8g00835 | 614 | NCBIfam | pentatricopeptide repeat | 308 | 342 | IPR002885 | - | |
| Viun8g00835 | 614 | NCBIfam | pentatricopeptide repeat | 343 | 376 | IPR002885 | - | |
| Viun8g00835 | 614 | NCBIfam | pentatricopeptide repeat | 274 | 306 | IPR002885 | - | |
| Viun8g00835 | 614 | NCBIfam | pentatricopeptide repeat | 486 | 515 | IPR002885 | - | |
| Viun8g00835 | 614 | NCBIfam | pentatricopeptide repeat | 379 | 411 | IPR002885 | - | |
| Viun8g00835 | 614 | NCBIfam | pentatricopeptide repeat | 449 | 481 | IPR002885 | - | |
| Viun8g00835 | 614 | NCBIfam | pentatricopeptide repeat | 414 | 446 | IPR002885 | - | |
| Viun8g00835 | 614 | Pfam | PPR repeat | 442 | 474 | IPR002885 | - | |
| Viun8g00835 | 614 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 306 | 340 | IPR002885 | - | |
| Viun8g00835 | 614 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 446 | 480 | IPR002885 | - | |
| Viun8g00835 | 614 | Gene3D | Tetratricopeptide repeat domain | 335 | 422 | IPR011990 | GO:0005515 | |
| Viun8g00835 | 614 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 341 | 375 | IPR002885 | - | |
| Viun8g00835 | 614 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 376 | 410 | IPR002885 | - | |
| Viun8g00835 | 614 | Pfam | PPR repeat family | 378 | 419 | IPR002885 | - | |
| Viun8g00835 | 614 | Pfam | PPR repeat family | 270 | 319 | IPR002885 | - | |
| Viun8g00835 | 614 | MobiDBLite | consensus disorder prediction | 60 | 84 | - | - | |
| Viun8g00835 | 614 | Gene3D | Tetratricopeptide repeat domain | 425 | 554 | IPR011990 | GO:0005515 | |
| Viun8g00835 | 614 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 411 | 445 | IPR002885 | - | |
| Viun8g00835 | 614 | Pfam | PPR repeat | 484 | 513 | IPR002885 | - | |
| Viun8g00835 | 614 | Pfam | PPR repeat | 344 | 367 | IPR002885 | - | |
| Viun8g00835 | 614 | Pfam | PPR repeat | 240 | 258 | IPR002885 | - | |
| Viun8g00835 | 614 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 481 | 515 | IPR002885 | - | |
| Viun8g00835 | 614 | MobiDBLite | consensus disorder prediction | 60 | 86 | - | - | |
| Viun8g00835 | 614 | ProSiteProfiles | Pentatricopeptide (PPR) repeat profile. | 271 | 305 | IPR002885 | - | |
| Viun8g00835 | 614 | Gene3D | Tetratricopeptide repeat domain | 261 | 334 | IPR011990 | GO:0005515 | |
| Viun8g00835 | 614 | Gene3D | Tetratricopeptide repeat domain | 108 | 260 | IPR011990 | GO:0005515 | |
| Viun8g00835 | 614 | PANTHER | ATPASE EXPRESSION PROTEIN 3 | 115 | 473 | - | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Viun8g00835 | 128 | 543 | Miscellaneous Gene Families | AT4G11690 | 25.532 | 1.66e-42 | 159 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Viun8g00835 | - | - | gmx:100793484 | 993.801 |