Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00701 ATGTCCCTCCAAACACTCATTTTCACACCTCTTTTGGTTCTACTCATGAGTATCCATTCTCACGCTCTTCTCGACCCTTCTAATCGGAAATATGCACCAAGCAAGGGAAGTGTTAGAGTTGCGTATTGGCCTTCGGGTGATGACCTTTCACCTTCTTCCATCGACACCAAGTACTTCACTCACATATACTACGCATTCATCCAACAACACCCTCAACTTTTCCACCTTAGCGTCACCGAATCCGAGAAAAAATGGATTCCACAATTCATCAACGGCCTCCGCCACCGTTACCCGCCGGTTAAAACTCTCTTGTCAATTGGCGGAGGTGGCAGCAACTCCACCGCCTTCTCCCTCATGGCCAGCACCCAACACAACCGACACGTGTTCATCAACTCCACCATCCACGTGGCACGCCAATACGGATTCGACGGTCTCGATTTGGACTGGGAATTCCCGGAAAACGAGGTCGACATGTCTAACCTAGGTATCTTGTTTCGTGAATGGCATCAAGCTATAACATTGGAAGCACAGGCTTGCAGAAAACCGCGTCTGCTTTTAACCGCCGCGGTTTATTACGCTTCCACCATTAAACTTATCGGTAATGGGCCACGAACATATCCGGTTCAGGCCATTCGCGATTACTTGGACTGGGCCAGCCCAATGTGCTTTGACTACCACGGGACTTGGGCCAATTTTACCGGCTTCAATGCTGCTTTGTATGATCCAAACTCCAACATTAGTACCCGGTACGGAATCGGGTCTTGGATCAAAGCGGGTGTGCCAGGGCAGAAGTTGGTTATGGGTTTACCATTATATGGGCGGGCATGGGCGCTCCGAGACCCGAATGTTAATGGGGTTGGAGCAGAGGCTGTTGGGGAAGCCACTGATACTGATGGGACTATGGATTATGATGAAATTTTGGTGTTCAACAAAGAAAATGGTGCCACTGTTGTGTACGATGATGTAGCTGTGTCTTTCTACTCTTATGCGGGTACTACTTGGATCGGGTACGATGATGGAGCATCCATAAGGAAGAAGGTTCAGTTTGCTAGGGCTTCGGGCTTGAAGGGCTATTTCTTTTGGGCTCTCGGAAAGGATAAGGATTGGACCATCTCAAGACAAGCTTCGAATGCATGGGGACATTGA 1146 0.4895 MSLQTLIFTPLLVLLMSIHSHALLDPSNRKYAPSKGSVRVAYWPSGDDLSPSSIDTKYFTHIYYAFIQQHPQLFHLSVTESEKKWIPQFINGLRHRYPPVKTLLSIGGGGSNSTAFSLMASTQHNRHVFINSTIHVARQYGFDGLDLDWEFPENEVDMSNLGILFREWHQAITLEAQACRKPRLLLTAAVYYASTIKLIGNGPRTYPVQAIRDYLDWASPMCFDYHGTWANFTGFNAALYDPNSNISTRYGIGSWIKAGVPGQKLVMGLPLYGRAWALRDPNVNGVGAEAVGEATDTDGTMDYDEILVFNKENGATVVYDDVAVSFYSYAGTTWIGYDDGASIRKKVQFARASGLKGYFFWALGKDKDWTISRQASNAWGH 381
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00701 381 SUPERFAMILY (Trans)glycosidases 39 368 IPR017853 -
Viun8g00701 381 PANTHER CHITINASE 22 379 - -
Viun8g00701 381 ProSiteProfiles Glycosyl hydrolases family 18 (GH18) domain profile. 37 381 IPR001223 GO:0005975
Viun8g00701 381 FunFam Class V chitinase CHIT5b 271 337 - -
Viun8g00701 381 Pfam Glycosyl hydrolases family 18 40 366 IPR001223 GO:0005975
Viun8g00701 381 CDD GH18_plant_chitinase_class_V 38 372 - -
Viun8g00701 381 ProSitePatterns Glycosyl hydrolases family 18 (GH18) active site signature. 142 150 IPR001579 GO:0004553|GO:0005975
Viun8g00701 381 Coils Coil 381 381 - -
Viun8g00701 381 SMART 2g34 37 366 IPR011583 GO:0008061
Viun8g00701 381 Gene3D - 271 337 IPR029070 -
Viun8g00701 381 Gene3D Glycosidases 52 367 - -
Viun8g00701 381 SUPERFAMILY Chitinase insertion domain 272 337 IPR029070 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00701 Viun-Chr8 5667406 5669017 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00701 9 379 Glycoside Hydrolase AT4G19810 42.359 4.63e-97 292
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00701 K01183 - gmx:100787511 681.404