Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00688 ATGGAAATGTTCCTAAAAAACCCTTTATACACAAGCCCAGAACCTTGTCAGCACCTTGCTGAGTACAAGCTCAAGCATGGTTTCAATGGCTACAAAGCCATCCAAAAGCTCCTTGTGACCTCCCCAATTGGGAAAACCAGTGTGAAGAAACCCAACACGAAGGCACCCAGATGCAGCTTCTGTAATGGCTGTGAAGGGAGGTTGTATTTGTGTCTGATTTGCTCTTCATTCTCATGTTTGGATCACACCATTTTGCACCCTCAGTCAGAAACTGGCCATGCTGTTTTTGTGGACATTGAAAGGGCTGAACTTTATTGTGGGGTGTGCTGTGATCAGTTGTATGACCCTGATTTTGACCAAGTTGTGATGTCTAAGCACTCAACGGGGTTGACAAGTGGTGCCACTGGGAATGAAAGCATTGGGCAGAGGCTGATCAAGAGGAGGAGATTGGTTTCTGGGGTTGGGTTGAATTTTCAGAAATCTAAGTGTGGAGTTTCCACCAAAGATGTGAGAGCTAAATCATGTTATCCTATGGGGTTGAGGGGATTGAACAATCTTGGTAGCACGTGTTTCATGAATTCTGTGCTCCAAGTGTTGCTTCATGCTCCTCCTGTCAGGGACTATTTCCTTAGTGGTGGACACAGATTGGAAAATTGTCATCGTAGAAGAACCACAGACCTGATGTGTTTGCTGTGTGAAGTCAATGCTATTTTTTCAGCTGTGTACTCCGGGGATCAGAATCCATATACTCCTGCTCAGTTTCTATACAGCTGGTGGCAGCATTCAGCAAATTTAGCGAGTTATGAACAGCAGGATGCTCACGAGTTTTTCATTTCGATGTTAGATGCAATCCATGAGAAAGAGGGCAAAGCAAGAAATGGAAGCAAAGGTAACGAAGACTGTCAGTGCATTGCTCATAGGGTGTTCTATGGGTTATTGAGATCAGATGTTACTTGCATGACCTGTGGATTTACCTCAACAACCTATGATCCTTGTCTTGACATTTCACTTAACTTGAACACCAGTGTCTCTTCAACAGAAAAGGGTAAAAAGCTTACCAAACGGAATGACGATGGAAGCATGTCTACACTTTCTGGTTGTTTAGATTTGTTCACAAGGCCAGAGAAGTTGGGTTCAGACCAGAAACTTTACTGCCAGAACTGTCAGGAAAAGCAGGACTCTTTGAAGCAAATGTCCATTAGAAAGCTTCCATTAGTACTTAGTTTACATGTGAAACGATTTGAGCACTCTTTCGTCAAAAAGTCTTCAAGAAAAATAGACCGCTACCTACACTTCCCATTTTCCTTAGACTTGTCTCCATATTTGTCCTCCTCAATCCTCAGAGCCAGATATGGAAATAGAATCTATTCTTTTGGGGGTGATGAATCAGATATGTTTTCTGAGTTTGAAATTTTTGCTGTGGTGACACATTCGGGCACGCTGGAATCCGGCCATTATGTTTCGTTCGTGCGTATAAGGAATCAATGGTACAAATGTGATGATGCTTGGATAACTGAGGTTGATGAGGCTACAGTCCGAGCTTCACAGTGTTACATGATTTTCTATGCTCAGAAAACTTTATATAATAAAGCAAATGAAGATCAGAGTCACACTCCAAATTCCCCTGGAAGAGAGCTATATTTTCCTATTGCTGGTTGTTGCTAG 1665 0.4258 MEMFLKNPLYTSPEPCQHLAEYKLKHGFNGYKAIQKLLVTSPIGKTSVKKPNTKAPRCSFCNGCEGRLYLCLICSSFSCLDHTILHPQSETGHAVFVDIERAELYCGVCCDQLYDPDFDQVVMSKHSTGLTSGATGNESIGQRLIKRRRLVSGVGLNFQKSKCGVSTKDVRAKSCYPMGLRGLNNLGSTCFMNSVLQVLLHAPPVRDYFLSGGHRLENCHRRRTTDLMCLLCEVNAIFSAVYSGDQNPYTPAQFLYSWWQHSANLASYEQQDAHEFFISMLDAIHEKEGKARNGSKGNEDCQCIAHRVFYGLLRSDVTCMTCGFTSTTYDPCLDISLNLNTSVSSTEKGKKLTKRNDDGSMSTLSGCLDLFTRPEKLGSDQKLYCQNCQEKQDSLKQMSIRKLPLVLSLHVKRFEHSFVKKSSRKIDRYLHFPFSLDLSPYLSSSILRARYGNRIYSFGGDESDMFSEFEIFAVVTHSGTLESGHYVSFVRIRNQWYKCDDAWITEVDEATVRASQCYMIFYAQKTLYNKANEDQSHTPNSPGRELYFPIAGCC 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00688 554 SUPERFAMILY RING/U-box 15 120 - -
Viun8g00688 554 FunFam Ubiquitinyl hydrolase 1 10 131 - -
Viun8g00688 554 Gene3D Cysteine proteinases 175 531 - -
Viun8g00688 554 Pfam Zn-finger in ubiquitin-hydrolases and other protein 58 117 IPR001607 GO:0008270
Viun8g00688 554 SMART Zf_UBP_1 57 104 IPR001607 GO:0008270
Viun8g00688 554 Pfam Ubiquitin carboxyl-terminal hydrolase 182 522 IPR001394 GO:0004843|GO:0016579
Viun8g00688 554 SUPERFAMILY Cysteine proteinases 177 523 IPR038765 -
Viun8g00688 554 ProSiteProfiles Ubiquitin specific protease (USP) domain profile. 181 525 IPR028889 -
Viun8g00688 554 PANTHER UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 123 524 - -
Viun8g00688 554 FunFam Ubiquitinyl hydrolase 1 175 530 - -
Viun8g00688 554 ProSitePatterns Ubiquitin specific protease (USP) domain signature 1. 182 197 IPR018200 GO:0004843|GO:0006511
Viun8g00688 554 ProSiteProfiles Zinc finger UBP-type profile. 29 132 IPR001607 GO:0008270
Viun8g00688 554 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 10 131 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00688 Viun-Chr8 5507654 5511386 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00688 182 524 Miscellaneous Gene Families AT2G24640 29.345 2.57e-36 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00688 K11366 - gmx:100806347 1032.32