LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun8g00650	ATGCTTGTTGTGGTTGGAGTGTCGTGGGATCTGAATTGGTTCCTGCAGCTGTTTCTCTCTGTGATCGTCGTGGCCATTGGGGTTCACTTTTTCGTCAAGTCCACCGCTTCCAAGTACTTCGAGGTCGACGCCAATTTCGAAGGGGACCAACACCACGCCCTCGCCGACGCAATGCCCGGCGTTCTATCCTCCACCGATGATTCTCTCTGCGCCGTCTGCGCCACCCCCTCCTCCAAGAAGTGCTCGCGCTGCAAAGCGGTTCTTTATTGCTCCCAAGAATGCCAGCAGTCGCATTGGAGGTCTGGGCATAAAATAGTATGCAAGGATTTTCACCAAGCTGGTGCAAGAAGCCCGGCTCAAAATGGGGTAATTAATCGTGGGTTTAAGTCTTCTGCTGCTGGGGGCAAGAGCTCTTCAGCTATTGCGCTGATACCTGCCCGTGGAACAATTTATAGGCCAATTAAGCAGCCTAAAGATGTTCTTTTTCCCTATGATGAATTTGTCAAATATTTTAACTGGAACAAGCTAGGATTTCCTCCTTGTGGGCTATTGAATTGTGGAAACAGTTGCTTTGCAAATGTGGTTCTTCAGTGCCTCTCATTCACAAGGCCACTTGTTGCCTACTTGTTGGAGAAGGGTCACCGTCGAGAATGCAGTTGTAATGATTGGTGCTTTCTATGTGAATTTGAAAATCATGTTGAAAGAACAATGCAAAGTTCACAGGTGTTTTCTCCTACGAATATTCTCTCTCGATTGCCTAATATTGGTGGTACTCTGGGCTATGGAAGACAAGAGGATGCTCATGAGTTTATGAGGTTTTCCATTGATACCATGCAATCTGTGTGCCTTGATGAGTTTGGTGGAGAAAAATCTGTCCCTCCTAACCTCCAGGAGACTACCCTTATTCAACACATATTTGGCGGCCGTCTACAATCTGAGGTGGTTTGCACAAAATGTGAAAAGATTTCAAAACAGTATGAAAATATGATGGATTTGACAGTTGAGATTCATGGAGATGCTGCCTCCTTGGAGGAATGTCTAGATCAGTTTACTGCCAGGGAGCCACTTGATGGGGAGAATATGTATAAATGTGAGGGGTGCAAGGATTATGTCAAGGCATGGAAACGCCTTACTGTGAAATGCGCTCCAAATATTCTTACAGTCGCCTTGAAAAGATTTCAGAGTGGGAGGTTTGGGAAGCTTAACAAGAGAATAGCCTTCCCTGAGACTTTAAATCTTAGCCCTTATATGAGTGAAGCTGGAGATGGATCTGACGTTTATAAGCTGTATGGTGTTGTAGTACATATTGATATGCTAAATGCTTCATTTTTTGGTCATTACATCTGCTATATCAAGGACTTCCTGGGGAACTGGTATAGGATTGATGACTGGAAGGTTACGACTGTGGAGTTGGAAGAGGTACTTTCTGAGGGAGCATATATGCTTTTGTATAGCAGGTGTAGTGCCCGGCCATCAGGCCTTCAAATTCAAACTAGTGAATCTTCAGGGATAGCAGAAGTTCAAACAACAGAAGTGGAAGTGGAGTCTGGACAAACTCAACAAGATGACTGCCTCCTTTCGGAAATGAAGACTTTAACTTGTAGAGGTTCTGAGGTTTTGCCATCTGATTATAGTCCAGAATCGAAAGTTTCTTCCACCTATGATTGCGGCGAGTCTTGTGCTGGACTGAACTCAGAAGCCAAAAGAGAGCAGTTTGAGGATACGGGCATGACCAATGTTGATTCAACTGGTATCGGTAATGAAATTTCTTGTAGTGCTGTTGAATCAACATCTGTGCCTATTTCTCAAGCCGTCATCGATTTGGGGGATGTAGATATAACGGACAGATCGTTTGAAGATACTTCAGGCGAGCAAGATAATACTGATATGGTTAGGTCGTCTGGTTCTTGTCCTGGTTCACCCGAGGACTCTTCCTTCGGTAAGCATTCTTCCGTTTCAAGGGATCATCGAAACGTGGAAGATTTAGAACACAAAGCTGTGGCGAAAGACAAGCTGATTATAGCTAAAGATAATACATATTATGGTAATGGATACGTGAGTGCAAACGAGTCTTCTATTCCAGTTGAAGACGAAGGCAAACAATTTTCTGGCATCGGTTCTTCCCACTGA	2130	0.4441	MLVVVGVSWDLNWFLQLFLSVIVVAIGVHFFVKSTASKYFEVDANFEGDQHHALADAMPGVLSSTDDSLCAVCATPSSKKCSRCKAVLYCSQECQQSHWRSGHKIVCKDFHQAGARSPAQNGVINRGFKSSAAGGKSSSAIALIPARGTIYRPIKQPKDVLFPYDEFVKYFNWNKLGFPPCGLLNCGNSCFANVVLQCLSFTRPLVAYLLEKGHRRECSCNDWCFLCEFENHVERTMQSSQVFSPTNILSRLPNIGGTLGYGRQEDAHEFMRFSIDTMQSVCLDEFGGEKSVPPNLQETTLIQHIFGGRLQSEVVCTKCEKISKQYENMMDLTVEIHGDAASLEECLDQFTAREPLDGENMYKCEGCKDYVKAWKRLTVKCAPNILTVALKRFQSGRFGKLNKRIAFPETLNLSPYMSEAGDGSDVYKLYGVVVHIDMLNASFFGHYICYIKDFLGNWYRIDDWKVTTVELEEVLSEGAYMLLYSRCSARPSGLQIQTSESSGIAEVQTTEVEVESGQTQQDDCLLSEMKTLTCRGSEVLPSDYSPESKVSSTYDCGESCAGLNSEAKREQFEDTGMTNVDSTGIGNEISCSAVESTSVPISQAVIDLGDVDITDRSFEDTSGEQDNTDMVRSSGSCPGSPEDSSFGKHSSVSRDHRNVEDLEHKAVAKDKLIIAKDNTYYGNGYVSANESSIPVEDEGKQFSGIGSSH	709

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun8g00650	709	ProSiteProfiles	Ubiquitin specific protease (USP) domain profile.	181	487	IPR028889	-
	Viun8g00650	709	FunFam	Ubiquitin carboxyl-terminal hydrolase 15	175	495	-	-
	Viun8g00650	709	CDD	Peptidase_C19E	180	485	-	-
	Viun8g00650	709	SUPERFAMILY	Cysteine proteinases	177	489	IPR038765	-
	Viun8g00650	709	MobiDBLite	consensus disorder prediction	616	658	-	-
	Viun8g00650	709	FunFam	Ubiquitin carboxyl-terminal hydrolase 15	62	111	-	-
	Viun8g00650	709	MobiDBLite	consensus disorder prediction	686	709	-	-
	Viun8g00650	709	SUPERFAMILY	HIT/MYND zinc finger-like	68	110	-	-
	Viun8g00650	709	ProSiteProfiles	Zinc finger MYND-type profile.	70	107	IPR002893	-
	Viun8g00650	709	ProSitePatterns	Zinc finger MYND-type signature.	70	107	IPR002893	-
	Viun8g00650	709	PANTHER	UBIQUITIN CARBOXYL-TERMINAL HYDROLASE	98	489	-	-
	Viun8g00650	709	Pfam	MYND finger	70	107	IPR002893	-
	Viun8g00650	709	Pfam	Ubiquitin carboxyl-terminal hydrolase	181	484	IPR001394	GO:0004843\|GO:0016579
	Viun8g00650	709	ProSitePatterns	Ubiquitin specific protease (USP) domain signature 1.	182	197	IPR018200	GO:0004843\|GO:0006511
	Viun8g00650	709	MobiDBLite	consensus disorder prediction	627	647	-	-
	Viun8g00650	709	Gene3D	-	60	113	-	-
	Viun8g00650	709	Gene3D	Cysteine proteinases	178	495	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun8g00650	Viun-Chr8	5105564	5112438	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun8g00650	5	492	Miscellaneous Gene Families	AT4G31670	65.164	0.0	652

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun8g00650	K11855		-	gmx:100820594	1159.82