Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00626 ATGGACGAAGATCAAATAGAAGGTTGTGTGAGTGGGTACCTCAAGCAGAAAGGGTTTGCGCAAAACGATGACAAACTTCAACTTTCCAACACCGATTCCTCTCTTCAACCCAACACTCTCAATCGCGCTCAATTGGAGAGAGGTTCTGCTAGATACCATGATGGATATGGCAGACTAAGATCATGGGCATACAGGTCACTTGAATCATACAAGCATGAATTACTGCGTGTGCTTTATCCAGTATTTATCCATTGCTTCATGGATCTTGTGGCAAAAGGACATCTTCAGGAAGCTTGGAACTTTTTCAATACCTTTCGTGAGGACCATGAAATGTTGCACTCACGAGACCTTCAGAAATTGGAACTAGTTCTTTCTCCTACTCATTTGGAGGAAATGGAATTCGCACATTCCCTTAGGCAGAGTAAGTTCAACATAAAGATATGTCGGTATTCTTATGAGCTTCTATTGCAACACCTACATAGTATGCAATCCACCACAATAATTGGTATTATCAATGAGCATATTAACTTCCAAGTTACAGCTGGGCAACCGAGCTCAATTTCTGATGATCCAGAAGCTGTTACCCTCAGTGGAAGCATCCAGGATGCAGTAAACCAGATAAATCAGAAAGAAATCCTTTGGGGGATGTTTGAAGATTCTGTGGAAGACCACATAGATAAGGCTGGGGCCTTGCTTTCAGGCACAGAAAAGGGTGAAGGCGAAGGTAAAGAGGGAGACAATGATGAGAGTAAGAAAAGGTCAATTGATGTAGGAAAGCAAGGTAATTCAGTAAAAAAGGTAAAAAAGGACAAGGTCAGCAGTGCAACAGGGAAAAATGCTAAACCAGAAGCTAGCACTATATCTGCAGCACCTCGCATTAAACCAGAGCTACCCTTGCCCACAGTTTCAACTGATGTAGAACTGTCAATCCTAGAGGATTTAAGGAATCGTGTACAATTGAATAGTGTTGCTCTCCCTTCAGTTAACTTCTACACATTTGTAAATACACATAATGGTTTAAGCTGTTCATCAATATCCCACGATGGATCATTGCTTGTTGGAGGATTTTCTGACTCTTCACTAAAGGTTCTTTCTCTTCACCCTCCTCCTCTTTCCACCCTTCCGAAAGAACACCCTTTTTCCCTTTACAGCTTTATCTTGGGGTTATTTTTGACTCGTGTCTGCAGGTCTGGGATATGGCAAAACTTGAGCAACAATCCACTGCTCATTTTTCGCAGGGAGGGAATGACATGTCACAAAATGAACAAGTTATTGGGCAAAATAGTGGGAGAAGACAGTACACATTGTTTCAAGGTCACTCAGGTCCAGTCTATGCAGCCACTTTTAGTGCTGCCGGGGATTTTCTTCTTTCCTCTTCAGCGGACAAAACAGTTCGATTATGGAGTACAAAGCTTAATGCCAATCTTGTTTGTTACAAGGGTCACAATTACCCTATCTGGGATGTTCAGTCCTGCAGGGCATTATTTTGCCAGCTGTTCACATGACAGAACTGCCAGGATTTGGTCTATGGACAGAATAAAACCTTTAAGAATAATGGCAGGACATTTGTCAGATGTTGATTGTGTGCAGTGGCATCCCAACTGCAACTACATTGCTACTGGCTCCAGTGATAAAACAGTTCGACTGTGGGATGTGCAGAGTGGGGAATGTGTGCGGGTTTTCATTGGTCATAGAAGTATGATTTTGTCTTTGGCAATGTCCCCTGATGGTCGCTACATGGCATCTGGTGATGAAGATGGCACAATCATGATGTGGGACCTCTCTAGCGGCTGTTGTGTCACACCTCTAGTCAGTCACACCTCATGTGTCTGGTCACTCGCTTTCAGTTGTGAAGGTTCTCTTCTAGCATCTGGATCTGCTGATTGCACCGTCAAATTTTGGGATGTAACTACTGGTATAAAGGTTCCAAGGAATGAAGAAAATAGAAGTGGGAATGCTAACAGACTCAGATCATTAAAAAGCCTGCCAACCAAATCTGCTTCAGTTTACTCTCTCCAGTTTTCTCGCAGGAATCTTCTTTTTGCAGCTGGTGCTCTTGCAAAAAGTGGTTGTTAG 2076 0.4282 MDEDQIEGCVSGYLKQKGFAQNDDKLQLSNTDSSLQPNTLNRAQLERGSARYHDGYGRLRSWAYRSLESYKHELLRVLYPVFIHCFMDLVAKGHLQEAWNFFNTFREDHEMLHSRDLQKLELVLSPTHLEEMEFAHSLRQSKFNIKICRYSYELLLQHLHSMQSTTIIGIINEHINFQVTAGQPSSISDDPEAVTLSGSIQDAVNQINQKEILWGMFEDSVEDHIDKAGALLSGTEKGEGEGKEGDNDESKKRSIDVGKQGNSVKKVKKDKVSSATGKNAKPEASTISAAPRIKPELPLPTVSTDVELSILEDLRNRVQLNSVALPSVNFYTFVNTHNGLSCSSISHDGSLLVGGFSDSSLKVLSLHPPPLSTLPKEHPFSLYSFILGLFLTRVCRSGIWQNLSNNPLLIFRREGMTCHKMNKLLGKIVGEDSTHCFKVTQVQSMQPLLVLPGIFFFPLQRTKQFDYGVQSLMPILFVTRVTITLSGMFSPAGHYFASCSHDRTARIWSMDRIKPLRIMAGHLSDVDCVQWHPNCNYIATGSSDKTVRLWDVQSGECVRVFIGHRSMILSLAMSPDGRYMASGDEDGTIMMWDLSSGCCVTPLVSHTSCVWSLAFSCEGSLLASGSADCTVKFWDVTTGIKVPRNEENRSGNANRLRSLKSLPTKSASVYSLQFSRRNLLFAAGALAKSGC 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00626 691 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 603 639 - -
Viun8g00626 691 Gene3D TFIID subunit TAF5, NTD2 domain 29 180 IPR037264 -
Viun8g00626 691 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 519 556 - -
Viun8g00626 691 Pfam WD40 associated region in TFIID subunit, NTD2 domain 48 175 IPR007582 -
Viun8g00626 691 CDD TAF5_NTD2 52 181 IPR007582 -
Viun8g00626 691 ProSiteProfiles Trp-Asp (WD) repeats profile. 603 644 IPR001680 GO:0005515
Viun8g00626 691 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 489 685 - -
Viun8g00626 691 Pfam WD domain, G-beta repeat 597 635 IPR001680 GO:0005515
Viun8g00626 691 Pfam WD domain, G-beta repeat 555 593 IPR001680 GO:0005515
Viun8g00626 691 Pfam WD domain, G-beta repeat 478 509 IPR001680 GO:0005515
Viun8g00626 691 Pfam WD domain, G-beta repeat 514 551 IPR001680 GO:0005515
Viun8g00626 691 ProSitePatterns Trp-Asp (WD) repeats signature. 622 636 IPR019775 -
Viun8g00626 691 SMART WD40_4 474 509 IPR001680 GO:0005515
Viun8g00626 691 SMART WD40_4 596 635 IPR001680 GO:0005515
Viun8g00626 691 SMART WD40_4 326 365 IPR001680 GO:0005515
Viun8g00626 691 SMART WD40_4 554 593 IPR001680 GO:0005515
Viun8g00626 691 SMART WD40_4 512 551 IPR001680 GO:0005515
Viun8g00626 691 SUPERFAMILY WD40 repeat-like 326 684 IPR036322 GO:0005515
Viun8g00626 691 MobiDBLite consensus disorder prediction 237 276 - -
Viun8g00626 691 Gene3D - 559 686 IPR015943 GO:0005515
Viun8g00626 691 CDD WD40 488 685 - -
Viun8g00626 691 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 561 597 - -
Viun8g00626 691 MobiDBLite consensus disorder prediction 230 292 - -
Viun8g00626 691 ProSitePatterns Trp-Asp (WD) repeats signature. 580 594 IPR019775 -
Viun8g00626 691 ProSiteProfiles Trp-Asp (WD) repeats profile. 561 602 IPR001680 GO:0005515
Viun8g00626 691 ProSiteProfiles Trp-Asp (WD) repeats profile. 519 560 IPR001680 GO:0005515
Viun8g00626 691 SUPERFAMILY Taf5 N-terminal domain-like 40 180 IPR037264 -
Viun8g00626 691 PRINTS G protein beta WD-40 repeat signature 622 636 IPR020472 -
Viun8g00626 691 PRINTS G protein beta WD-40 repeat signature 580 594 IPR020472 -
Viun8g00626 691 PRINTS G protein beta WD-40 repeat signature 538 552 IPR020472 -
Viun8g00626 691 ProSiteProfiles Trp-Asp (WD) repeats profile. 489 518 IPR001680 GO:0005515
Viun8g00626 691 Gene3D - 484 558 IPR015943 GO:0005515
Viun8g00626 691 ProSitePatterns Trp-Asp (WD) repeats signature. 538 552 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00626 Viun-Chr8 4834240 4843325 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun8g00626 501 689 Miscellaneous Gene Families AT5G08390 27.513 3.31e-21 97.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00626 K03130 - csin:114283175 674.085
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00626 8 4834240 4843325 Viun9g03157 9 38953140 38962134 PCT