Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00579 ATGGGTGAAGCTCCAGTATTCTACATTAATGGGTTCTCAAAGTTTGAACACGAAATCCAACAGCAGAACCATGTCAACGACCAGAACCATGATTCCTCTTGGTACGAGGAAATCATCGATGAAGATCTGAAATGGTCTTTTAAACTCAACAGTGTGCTTCATAAAGCGATTAGTGAGTACCAGGATATAACACTCTTAGACACCAAGCGTTTTGGCAAGGCTTTGGTTCTTGATGGGAAGATGCAGAGTGCAGAAACAGACGAGTTTATCTATCACGAATGCTTGATTCACCCTTCTCTTTTGTGTCACCCTAATCCGAAGACAGTGTTTATAATGGGAGGAGGTGAAGGTTCTGCAGCAAGGGAAGCCCTTAGGCACAGGTCAATGGACAGAGTGGTTATGTGTGATATCGACAAGGAAGTGGTAGATTTCTGCAAAAAATACTTGATTGCAAATAGGGAAGCATTTTCTAATAAGAAGCTCGACCTTGTCATCAATGATGCCAAGGTTGAATTGGTGAAGAGAAAGGAGAAATTTGATATCATTGTTGGAGATTTAGCAGATCCACTTGAAGATGGACCTTGTTACCAACTCTACACCAAATCCTTCTATGAGAAGATACTGAAACCAAAGTTGAATGATAATGGCATTTTTGTGACCCAGGCTGGACCAGCAGGTATCTTCACACACAAAGAGGTTTTCACTTCTATATATAACACAATCAAACAGGTCTTCAAATATGTCATTGCATACACAACTCATGTACCATCATTTGCTGACACATGGGGATGGGTCATGGCTTCGGATGAACCACTATCAATTTGTGGTGAAGAAATGGACAGAAGAATCGCAGAAAGAATAGATGGGGAACTTCTCTATCTAAATGGTGCTTGGTTCCATTCATCCACAACCATGAATAAAACGGTTCACCAATCTCTGCAGAATGAAACTCATGTTTACACAGAAGAAAATGCTAGATTTATTCCAGGACATGGAATGGCTTTTCGACTCTAA 1014 0.4063 MGEAPVFYINGFSKFEHEIQQQNHVNDQNHDSSWYEEIIDEDLKWSFKLNSVLHKAISEYQDITLLDTKRFGKALVLDGKMQSAETDEFIYHECLIHPSLLCHPNPKTVFIMGGGEGSAAREALRHRSMDRVVMCDIDKEVVDFCKKYLIANREAFSNKKLDLVINDAKVELVKRKEKFDIIVGDLADPLEDGPCYQLYTKSFYEKILKPKLNDNGIFVTQAGPAGIFTHKEVFTSIYNTIKQVFKYVIAYTTHVPSFADTWGWVMASDEPLSICGEEMDRRIAERIDGELLYLNGAWFHSSTTMNKTVHQSLQNETHVYTEENARFIPGHGMAFRL 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00579 337 Pfam Spermine/spermidine synthase domain 88 266 - -
Viun8g00579 337 NCBIfam fused MFS/spermidine synthase 105 257 - -
Viun8g00579 337 FunFam Polyamine aminopropyltransferase 85 332 - -
Viun8g00579 337 Pfam Spermidine synthase tetramerisation domain 34 85 IPR035246 -
Viun8g00579 337 Gene3D Vaccinia Virus protein VP39 85 336 IPR029063 -
Viun8g00579 337 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 33 313 IPR029063 -
Viun8g00579 337 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 32 269 IPR030374 -
Viun8g00579 337 PANTHER THERMOSPERMINE SYNTHASE ACAULIS5 26 324 - -
Viun8g00579 337 CDD AdoMet_MTases 113 221 - -
Viun8g00579 337 Hamap Polyamine aminopropyltransferase [speE]. 33 314 IPR001045 GO:0003824
Viun8g00579 337 Gene3D Spermidine synthase, tetramerisation domain 32 84 IPR037163 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00579 Viun-Chr8 4212937 4216820 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00579 K18787 - gmx:100815510 650.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00579 8 4212937 4216820 Viun8g00579 8 4212937 4216820 ECH