Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00565 ATGAAGCTTTGGTGCTGTCTATGCTTCACTGAAGAGGAACAAGATAACCTAAACCTCATGAAGGAAGAGGACATTTCCGAAAACGACGTCGTTACCGGTGTTGGAGCCGCTGCTGTCGCCGACCACCACGCTGAAGAAAATCGTGACGATGACCGATTCGCGATGACGTCGGTGCAGCCGCGCACCGAGGCATTGATCTCGTGGACCGGCGAGTGCAGCGCCGCCGCGTGCTCGGACAGCACCGTCGCAGGCGGCGTCGAGAACCGCGATTTGAGCCACAAGCGCGCCAAGTTCTATGCCGATTTCGAGGAGCGGTACTTTTCGACGAATGCAGGGAAATGCGGTGCTTCTAATGAATGTGGAGATTATGACTACATTAACGATTCTCTTCGACCCAACGGTGAGGCTTGTTGTGATACATTTGCATTGATGGGCGGTGGTGAGGAGAGTGGTTTTGATTCCAGCATTGTGGAAGACGGTGAAGGAGATAATATTGATATCTTGAAAGTGGAAGATGTAGAGATCAGAATGGATCTCACCGATGACTTGTTGCATATGGTTTTCTCGTTTTTGGATCATCCCAATCTTTGCAAGGCTGCCAGGGTTTGTAAACAGTGGCGAAGTGCAAGTGCTCATGAAGATTTCTGGAAAAGCTTGAATTTTGAAGATCGTAACATTTCTGTGGAACAATTTGAAGACATGTGTAGGCGTTATCCCAATGCCACAGCAGTGAGCATATCTGGTTCTGCTATTTACTTGCTTGTCATGCGGGCTATCTCTTCATTAAGGAATCTTGAGGTTCTAACATTAGGAAGAGGACAAATAGCTGATACTTTTTTCCATGCTTTAGCTGATTGTTCTATGCTAAAAAAGTTGAATATCAACGATTCTACACTTGGCAATGGCATTCAAGAGATAACTATAAATCATGACAGAATGTGTCATCTTCAATTAACAAAATGCCGTGTGATGCGAATAGCAGTCAGGTGCCCACAGCTGGAAACTATGTCATTGAAGCGCAGTAACATGGCACAGGTTGTACTCAATTGTCCACTTTTGCATGAGCTTGATATAGGCTCTTGCCACAAACTTCCTGATGCTGCAATACGAGCTGCTGCAACTTCGTGCCCACAACTTGTTTCACTGGACATGTCAAATTGTTCTTGTGTCAGTGATGAAACTCTGCGTGAAATAGCATTGAGTTGTGCTAACCTTAGTTTTCTCGATGCATCATACTGCCCAAACATATCTCTGGAGTCTGTTAGACTGCTGATGTTGACAGTTCTAAAGCTTCATAGTTGTGAGGGGATCACTTCTGCCTCAATGGCTGCAATAGCTCATAGTGATATGTTGGAGGTTTTGGAGCTTGATAATTGTAGCCTGTTGACATCAGTATCATTGGATCTTCCCCGTTTGCAGACTATTAGATTGGTACACTGTCGCAAGTTTGCCGATTTAAACTTGAGGACTATGATGCTTTCTAATATTCTGGTATCAAACTGTCCTGCACTTCATCGTATCAATATCACTTCAAATTCACTTCAAAAACTAGCATTGCAAAAGCAAGAAAGTTTAACCACCTTAGCCCTACAATGTCAATCTTTACAAGAAGTGGACCTCTCAGAGTGTGAATCTTTGACGAACTCTATATGTGATGTTTTTAATGATGTTGGAGGATGCCCCATGCTGAAATCACTAGTTCTAGCTAATTGTGAGAGCTTGACCTCAGTTCGGTTCTTCAGCACCTCTTTGGTCAGTCTTTCCCTTGCTGATTGTAGGGCAATCACTACTCTGGAGCTCACATGCCCTAACCTTGAGAAAGTAATTTTGGATGGCTGTGATCATTTAGAAAGAGCATCCTTTTGTCCTGTTGGTCTTCGATCTCTCAATTTAGGAATATGTCCAAAATTAAATATACTCAGCATAGAAGCCATGGTTATGGTCTCACTTGAGCTGAAAGGATGTGGTGTACTGTCTGAAGCATCAGTTAATTGTCCTCTCTTGACATCTTTGGATGCTTCATTTTGCAGCCAACTGACAAATGAATGCTTGTCTGCAACAACTGCCTCTTGCCCAATGATTGAATCGTTAATATTGATGTCATGCTCATCAATTGGTTTGGATGGACTTTGTTCTTTGCAGCGGCTCCCAAATTTGACCCTACTTGATTTGTCATATACCTTTTTGGTCAATTTGCAGCCTGTTTTTGAGTCTTGTACACAGCTAAAGGTATTAAAGTTGCAGGCATGCAAATATCTCACTGACTCATCACTTGAACCACTCTACAAGAGGGGAGCTTTACCAGCCCTCCAGGAGTTGGACTTGTCTTATGCTACACTATGCCAGTCTGCTATAGAGGAGCTTCTTTCTTGCTGCACACACCTTACACATGTGAACTTGACTGGCTGTGCCAATATGCACGACTTAAATTGGGGATGTAGTCGCGGGCATATTGCTGGTGTAAATGTGCTATCTGTTACAAGTTCTTATGAAAATCTCCATGAGCTAAGTGAGCAACCCACTCGACTACTGCAGAACTTAAACTGCGTGGGCTGTCTGAACATTCGGAAAGTTTTCATTCCATTAGCGGCACATTGTTCCTGTTTGTTGTTTTTAAACCTTTCTCTATCAACTAATTTGAAAGAGGTTGATGTTGCATGTCTCAACCTAAGCTGGCTTAATCTAAGCAATTGTTACTCTTTGGAAGTTTTGAAACTAGATTGTCCAAGATTGACCAGTCTATTCCTCCAGTCTTGCAACATTGATGAAGAAGCAGTAGAGACTGCTATAACCAAATGCGCTATGCTGGAGACTCTTGATGTTCGCTTCTGTCCAAAGATTAGCTCAACGAGCATGGGAAGATTGCGTGCAGCATGTCCTAATTTGAAGCGTATATTCAGCAGCTTGTCAACTTCATAA 2919 0.4323 MKLWCCLCFTEEEQDNLNLMKEEDISENDVVTGVGAAAVADHHAEENRDDDRFAMTSVQPRTEALISWTGECSAAACSDSTVAGGVENRDLSHKRAKFYADFEERYFSTNAGKCGASNECGDYDYINDSLRPNGEACCDTFALMGGGEESGFDSSIVEDGEGDNIDILKVEDVEIRMDLTDDLLHMVFSFLDHPNLCKAARVCKQWRSASAHEDFWKSLNFEDRNISVEQFEDMCRRYPNATAVSISGSAIYLLVMRAISSLRNLEVLTLGRGQIADTFFHALADCSMLKKLNINDSTLGNGIQEITINHDRMCHLQLTKCRVMRIAVRCPQLETMSLKRSNMAQVVLNCPLLHELDIGSCHKLPDAAIRAAATSCPQLVSLDMSNCSCVSDETLREIALSCANLSFLDASYCPNISLESVRLLMLTVLKLHSCEGITSASMAAIAHSDMLEVLELDNCSLLTSVSLDLPRLQTIRLVHCRKFADLNLRTMMLSNILVSNCPALHRINITSNSLQKLALQKQESLTTLALQCQSLQEVDLSECESLTNSICDVFNDVGGCPMLKSLVLANCESLTSVRFFSTSLVSLSLADCRAITTLELTCPNLEKVILDGCDHLERASFCPVGLRSLNLGICPKLNILSIEAMVMVSLELKGCGVLSEASVNCPLLTSLDASFCSQLTNECLSATTASCPMIESLILMSCSSIGLDGLCSLQRLPNLTLLDLSYTFLVNLQPVFESCTQLKVLKLQACKYLTDSSLEPLYKRGALPALQELDLSYATLCQSAIEELLSCCTHLTHVNLTGCANMHDLNWGCSRGHIAGVNVLSVTSSYENLHELSEQPTRLLQNLNCVGCLNIRKVFIPLAAHCSCLLFLNLSLSTNLKEVDVACLNLSWLNLSNCYSLEVLKLDCPRLTSLFLQSCNIDEEAVETAITKCAMLETLDVRFCPKISSTSMGRLRAACPNLKRIFSSLSTS 972
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00565 972 PANTHER OS10G0396666 PROTEIN 162 972 - -
Viun8g00565 972 Gene3D Ribonuclease Inhibitor 823 970 IPR032675 -
Viun8g00565 972 SUPERFAMILY RNI-like 626 967 - -
Viun8g00565 972 SMART fbox_2 179 219 IPR001810 GO:0005515
Viun8g00565 972 Pfam F-box-like 181 221 IPR001810 GO:0005515
Viun8g00565 972 CDD F-box_FBXO41 181 220 - -
Viun8g00565 972 ProSiteProfiles F-box domain profile. 173 219 IPR001810 GO:0005515
Viun8g00565 972 SUPERFAMILY RNI-like 424 643 - -
Viun8g00565 972 Gene3D Ribonuclease Inhibitor 732 818 IPR032675 -
Viun8g00565 972 Gene3D Ribonuclease Inhibitor 170 423 IPR032675 -
Viun8g00565 972 Gene3D Ribonuclease Inhibitor 582 731 IPR032675 -
Viun8g00565 972 Gene3D Ribonuclease Inhibitor 424 581 IPR032675 -
Viun8g00565 972 FunFam F-box/LRR-repeat protein 15 732 817 - -
Viun8g00565 972 SMART LRR_CC_2 933 958 IPR006553 -
Viun8g00565 972 SMART LRR_CC_2 376 401 IPR006553 -
Viun8g00565 972 SMART LRR_CC_2 469 494 IPR006553 -
Viun8g00565 972 SMART LRR_CC_2 691 716 IPR006553 -
Viun8g00565 972 SMART LRR_CC_2 739 764 IPR006553 -
Viun8g00565 972 SMART LRR_CC_2 532 556 IPR006553 -
Viun8g00565 972 SMART LRR_CC_2 560 590 IPR006553 -
Viun8g00565 972 SMART LRR_CC_2 792 827 IPR006553 -
Viun8g00565 972 SMART LRR_CC_2 908 932 IPR006553 -
Viun8g00565 972 SMART LRR_CC_2 350 375 IPR006553 -
Viun8g00565 972 SMART LRR_CC_2 665 690 IPR006553 -
Viun8g00565 972 SMART LRR_CC_2 767 791 IPR006553 -
Viun8g00565 972 SMART LRR_CC_2 602 627 IPR006553 -
Viun8g00565 972 SMART LRR_CC_2 402 427 IPR006553 -
Viun8g00565 972 SMART LRR_CC_2 286 309 IPR006553 -
Viun8g00565 972 SUPERFAMILY RNI-like 200 422 - -
Viun8g00565 972 SUPERFAMILY F-box domain 178 209 IPR036047 GO:0005515
Viun8g00565 972 FunFam F-box/LRR-repeat protein 15 isoform C 825 968 - -
Viun8g00565 972 FunFam F-box/LRR-repeat protein 15 171 420 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00565 Viun-Chr8 4057070 4067117 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00565 - - gmx:100782842 1640.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00565 8 4057070 4067117 Viun8g00565 8 4057070 4067117 ECH