Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun8g00479 ATGGCTCTCATCACTCGAACCGGAACCGCGTGGCGCCTCCCTCAGCGGCTACTTTCAGCGTCCCTCCTCCACAGCGGTTCCCCCGGCGCGGTGGCTCCGACGAGTTATTGTGCACCGTCTCCGCCGGCGAAGTCCTCCCCAGTGGGATTGTCGAAGCCGGCTGAGTTCGTAATCTCGAAGGTCGACTCGCTCATGAACTGGGCCCGTACGGGGTCTATCTGGCCCATGACGTTTGGGCTGGCCTGCTGCGCCGTGGAGATGATGCACACGGGCGCGGCCCGTTACGATCTTGACCGCTTCGGAATCATCTTCAGGCCCAGCCCACGCCAGTCCGATTGCATGATCGTTGCTGGCACCCTCACCAACAAGATGGCCCCTGCTCTTCGCAAGGTTTATGATCAAATGCCAGAACCAAGGTGGGTGTTATCAATGGGAAGCTGTGCCAACGGAGGAGGATATTACCACTATTCATACTCAGTTGTGAGGGGATGCGACAGGATTGTTCCTGTGGACATATATATCCCAGGTTGTCCTCCAACTGCAGAGGCTTTACTCTATGGCCTTCTCCAGCTTCAGAAGAAGATCAATAGGCGCAAGGACTTTCTCTGGTGGTGGACAAAGTGA 624 0.5689 MALITRTGTAWRLPQRLLSASLLHSGSPGAVAPTSYCAPSPPAKSSPVGLSKPAEFVISKVDSLMNWARTGSIWPMTFGLACCAVEMMHTGAARYDLDRFGIIFRPSPRQSDCMIVAGTLTNKMAPALRKVYDQMPEPRWVLSMGSCANGGGYYHYSYSVVRGCDRIVPVDIYIPGCPPTAEALLYGLLQLQKKINRRKDFLWWWTK 207
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun8g00479 207 Pfam NADH ubiquinone oxidoreductase, 20 Kd subunit 82 191 IPR006137 GO:0051536
Viun8g00479 207 PANTHER NADH DEHYDROGENASE 51 206 - -
Viun8g00479 207 Hamap NAD(P)H-quinone oxidoreductase subunit K, chloroplastic [ndhK]. 48 196 IPR006138 GO:0008137|GO:0048038|GO:0051539
Viun8g00479 207 NCBIfam NADH-quinone oxidoreductase subunit B 56 197 IPR006138 GO:0008137|GO:0048038|GO:0051539
Viun8g00479 207 ProSitePatterns Respiratory-chain NADH dehydrogenase 20 Kd subunit signature. 163 179 IPR006138 GO:0008137|GO:0048038|GO:0051539
Viun8g00479 207 Gene3D - 46 203 - -
Viun8g00479 207 FunFam NADH-quinone oxidoreductase subunit B 2 49 207 - -
Viun8g00479 207 SUPERFAMILY HydA/Nqo6-like 55 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun8g00479 Viun-Chr8 3499597 3500853 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun8g00479 K03940 - gmx:100814025 389.423
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun8g00479 8 3499597 3500853 Viun8g00479 8 3499597 3500853 ECH
Viun8g00479 8 3499597 3500853 Viun9g03309 9 39850740 39853776 PCT