LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun7g03988	ATGGAGGGTTTAGCAGGTTTGAGCCATCTTTTTGTGACAATATTTCTAACTGGGTTTGGTGGTGTCATAGCTATTCCTTCAATCACAGATGTTACCATGGCTGCACTTTGCCCTGGTCAAGATCAGTGTTCCCTTGCCATTTACCTCTCTGGTATCCAACAAGCTATGGCTGGAGTGGGGTCAGTGGTGATGACACCACTTATAGGAAACTTGTCCGACAGATATGGCAGGAAAGCCTTGATCACTCTTCCTCTCACTCTCTCAGTCATTCCTTATGTGATATTGGCATATAGCAGGGAGACCCAATTCTTCTATGCGTACTACGTTGTGAGAACTCTTGCTTCCATGGCAGGCGAAGGGTCCTTCCACTGCCTGGCTTTAGCATATGTGGCAGACAAGGTTCCAGATGGGAAACGAACATCTGCATTTGGGATACTTGCTGGTGTTGGATCAGCATCATTCGTTGGTGGAACACTAGCAGCTCGTTTTCTATCCACTGCCTTGACATTTCAGGTTGCTGCTGTCTTGTCAATGATTGCATTGGTGTACATGAGAATTTTCCTTAAGGATAGTGTACCTGGTGGTGGTGTGAGGCAGCCATTGTTGAAAGAGGTGGAGGAGACATGTGCTGAGGATGATTCATCACGAAGGGCAACAGGAGCATTCAAGAAACTTCCCTCTCTGGGGGATTTGATTTGCTTGGTCAAGTGTAGTCCCACGTTCTCACAAGCAGCAGTTGTTTCGTTCTTCAATAGTCTTGTGGAAGGTGGCTTGATGGCTGTATTGCTGTATTATTTAAAGGCACGGTTTCAATTCAACAAGAACCAGTTTGCAGATTTGTTGATGATTACTGGGGTTGGAGCTACTCTTGCACAACTATTTCTCATGCCCGTTTTAGTGCCTGTTATAGGAGAGGAGAAGCTGCTCTCCACAGGGCTCTTGATTGGCTGCATAAATGTCCTAGTCTACAGCATAGCATGGTCAGGATGGGTTCCTTATGCTCTAGCAGGTTGCTCTATATTCACAGTTTTTGTGCGGCCAAGTTTATGCAGCATTGCATCGAAGCAAGTTGGACCTACAGAACAGGGAATGGTTCAAGGATGTCTTTCAGGAATTAGTTCCTCCGCCAACATCATTGCTCCGTTAGTTTTCAGTCCACTGACAGCCTTATTCCTGTCAGAAAATGCTCCGTTTTATTATCCTGGCTTCAGTCTGCTGTGCCTTGGGCTAGCGATGATGATAGCATTTTTTCAGAGTCTAATGATCCGAGCTGCTCCTCCTATTGTGGTTGGAAAAAATAGCAGTAGCCGCTGCACGGATACTTTGGTCTGA	1332	0.4595	MEGLAGLSHLFVTIFLTGFGGVIAIPSITDVTMAALCPGQDQCSLAIYLSGIQQAMAGVGSVVMTPLIGNLSDRYGRKALITLPLTLSVIPYVILAYSRETQFFYAYYVVRTLASMAGEGSFHCLALAYVADKVPDGKRTSAFGILAGVGSASFVGGTLAARFLSTALTFQVAAVLSMIALVYMRIFLKDSVPGGGVRQPLLKEVEETCAEDDSSRRATGAFKKLPSLGDLICLVKCSPTFSQAAVVSFFNSLVEGGLMAVLLYYLKARFQFNKNQFADLLMITGVGATLAQLFLMPVLVPVIGEEKLLSTGLLIGCINVLVYSIAWSGWVPYALAGCSIFTVFVRPSLCSIASKQVGPTEQGMVQGCLSGISSSANIIAPLVFSPLTALFLSENAPFYYPGFSLLCLGLAMMIAFFQSLMIRAAPPIVVGKNSSSRCTDTLV	443

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Viun7g03988	443	CDD	MFS_SLC46_TetA_like	10	421	-	-
	Viun7g03988	443	ProSiteProfiles	Major facilitator superfamily (MFS) profile.	6	427	IPR020846	GO:0022857
	Viun7g03988	443	Gene3D	MFS general substrate transporter like domains	7	418	IPR036259	-
	Viun7g03988	443	PRINTS	Tetracycline resistance protein signature	50	69	IPR001958	GO:0022857
	Viun7g03988	443	PRINTS	Tetracycline resistance protein signature	81	105	IPR001958	GO:0022857
	Viun7g03988	443	PRINTS	Tetracycline resistance protein signature	365	388	IPR001958	GO:0022857
	Viun7g03988	443	PANTHER	MAJOR FACILITATOR SUPERFAMILY DOMAIN-CONTAINING PROTEIN 10	7	419	-	-
	Viun7g03988	443	Pfam	Major Facilitator Superfamily	10	196	IPR011701	GO:0022857\|GO:0055085
	Viun7g03988	443	SUPERFAMILY	MFS general substrate transporter	13	414	IPR036259	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun7g03988	Viun-Chr7	39470781	39476245	Dispersed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Viun7g03988	2	436	Organic Solute Cotransporters	AT2G16990	46.667	5.41e-126	370

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun7g03988	-		-	gmx:100805770	786.563

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun7g03988	7	39470781	39476245	Viun7g03988	7	39470781	39476245	ECH