Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03984 ATGGATGCCCAGATTGATCACTATGCGGTGCTAGGGTTACCATCGGGAGAAGAAGGTGCGAAGCTAACGGAGAAAGAAATCAACAAGGCATACAGATGGAAGGCTCTGGAACTGCACCCAGACAAGAGGCCCGACGACCCCAACGCCGCCGCCAACTTCCAACAGCTTCGCACATCCTACGACATTCTCCGGGATGACAAGGCCCGTAAGTTGTTCGACGAACTATTGCGCGTCAAGCGCGACCGCGAGCTCCGCCACTCCCAGCGCGACGGAAAGCGCCGCAAGATGGTTTCCGATCTCGAGCGCCGGGAGCGCGATGCTAACGCCCCCGACCTCGCCGCCAAGGAGCGCGAAGAGGAGGCCAGGATCGCGCGCAAGCTCAAGGAGGAGATCGCGAGAATTCGTGCCATGCACAGCATGAAGGCAGCGCCACCACCTCCACCGGAAACGGAGAAAGAGAGTGGCCGTGGCGGCGGGGGAGGTGGATTGGATCAAGAGAAGGTTCTGAAGGTTTCTTGGGAAAAGGTGGGTGAGGATTATTCGGCTGATAAGTTGAGGGAATTGTTTTCAGAGTTTGGTGAAGTGGAAGATGTTGTCATCAAAGGGAGTAAGAAGAAGGGTTCTGCACTCGTTGTTATGGCCACTAAAGAAGGAAGTGTTGCTGCGACGGGAAGTGTGATTGGTCATCTTGCTAATCCGTTGCTGGTTTTACCTCTTAAACCGGCAACTGTTGCAGATTCTTCCAGTGTTCCGAAGTCCGCTGAAACTCCCAAATTGAGTAATCTGGTCGGTGCTGGATATCAAGCTTTTGAGGATTCTGTTCTGAAGAAACTGCAAAAGGCTGCAGAAAAGCAAAAATGA 861 0.5354 MDAQIDHYAVLGLPSGEEGAKLTEKEINKAYRWKALELHPDKRPDDPNAAANFQQLRTSYDILRDDKARKLFDELLRVKRDRELRHSQRDGKRRKMVSDLERRERDANAPDLAAKEREEEARIARKLKEEIARIRAMHSMKAAPPPPPETEKESGRGGGGGGLDQEKVLKVSWEKVGEDYSADKLRELFSEFGEVEDVVIKGSKKKGSALVVMATKEGSVAATGSVIGHLANPLLVLPLKPATVADSSSVPKSAETPKLSNLVGAGYQAFEDSVLKKLQKAAEKQK 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03984 286 Coils Coil 117 137 - -
Viun7g03984 286 CDD DnaJ 6 65 IPR001623 -
Viun7g03984 286 SUPERFAMILY RNA-binding domain, RBD 177 222 IPR035979 GO:0003676
Viun7g03984 286 ProSitePatterns Nt-dnaJ domain signature. 53 72 IPR018253 -
Viun7g03984 286 MobiDBLite consensus disorder prediction 138 164 - -
Viun7g03984 286 SUPERFAMILY Chaperone J-domain 4 76 IPR036869 -
Viun7g03984 286 Gene3D - 162 249 IPR012677 -
Viun7g03984 286 CDD RRM_DNAJC17 167 239 IPR034254 -
Viun7g03984 286 ProSiteProfiles dnaJ domain profile. 6 76 IPR001623 -
Viun7g03984 286 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 177 222 IPR000504 GO:0003723
Viun7g03984 286 Pfam DnaJ domain 6 73 IPR001623 -
Viun7g03984 286 Gene3D DnaJ domain 1 103 IPR036869 -
Viun7g03984 286 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 161 241 IPR000504 GO:0003723
Viun7g03984 286 SMART dnaj_3 5 68 IPR001623 -
Viun7g03984 286 MobiDBLite consensus disorder prediction 85 120 - -
Viun7g03984 286 PRINTS DnaJ domain signature 31 46 IPR001623 -
Viun7g03984 286 PRINTS DnaJ domain signature 48 68 IPR001623 -
Viun7g03984 286 PRINTS DnaJ domain signature 8 26 IPR001623 -
Viun7g03984 286 PANTHER DNAJ DOMAIN CONTAINING PROTEIN, EXPRESSED 1 286 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03984 Viun-Chr7 39431730 39436087 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03984 5 122 Miscellaneous Gene Families AT1G16680 31.356 1.87e-09 56.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03984 K09537 - gmx:100792307 443.351
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g03984 7 39431730 39436087 Viun7g03984 7 39431730 39436087 ECH