LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Viun7g03286	ATGGGAAAGCAAAAGCAACAAGTGATTTCGCGCTTCTTCGCTCGCAAAGCCAAATCTCCGTCTCCTCCTTCTTCTCCCCGTTCCAACCCTCCCACTCCCAAAATCTCCGCCACCGCCACATTCTCCCCTTCCAAACGCCGCCTTAAGTCCCTACTCACACCCCCTCGCAAGCTCCAGAAGCTTCAAGAACCTTCTTCCCCTTCACTCCACCAACGCTTCCTCCACAAGTTTCTCGAACCTTCCTCCCCTCAACACCCTCCTCCCCCTTCCTCTTCCACACGCCCAACCTACACTCCCCTCGAACAGCAGGTCCTCCACCTCAGAGCCAAACACCCCGACGTTCTCCTCATGGTCGAGGTCGGTTATAGGTACCGTTTCTTCGGCCAAGACGCCGAAAACGCTGCCAGAGTCTTAGGCATTTACGCGCACATGGATCACAATTTCTTAACCGCTAGCATACCAACTTTTCGATTGAATGTCCACGTCAGGAGGCTCGTCAGTGCTGGGTATAAGGTCGGCGTGGTCCGGCAGACCGAGACTGCTGCCATCAAGGCCCACGGTTCCAACCGCTCTGCGCCGTTCGGGCGCGGGCTGTCGGCGCTTTACACTAAGGCCACGCTTGAGGCGGCGCCGGAGATTGGGGGAGGGGAGGACGGGTGTAGTGGAGAGAGTAATTACTTACTTTGTGTGGTGGAGAAAAGTGTTGTGGGGGAGAAGGGGAATTGTGGGGTGGAGGGTGGTGCTGATGTGAGGATTGGGATTGTTGCTGTGGAGATTTCGACCGGGGATGTTGTTTACGGGGAGTTTTGTGATGGTTTTCTGAGGAGTGCGCTTGAGGCCGTTGTTGTGAACTTGTCTCCGGCTGAGTTGCTTCTTGGGGACCCTCTTTCAAAGCAAACAGAAAAGTTATTGCTGGATTTTGCTGGACCTGCCTCGAATGTTCGTGTGGAGCGTGTTTCACGAGATTGCTTCACTGATGGGGGTGCTCTTTCTGAAATTATGACCTTGTATGATAACGTGCATGTAGACGGTCAACCAGATTCACTACAAAACAAGAATTCGAGGGAGCACAAAAGTCAGCAGTTAGTAATCAAGGAGGTGTTGAACATGCCAGATTTGTCTGTCCAAGCTTTGGCCTTAACTATTCGGCATTTAAAGGAATTTGGTTTTGAAAGAATTTTGTGTTCAGGAGCTTCTCTAAGGCCCTTGTCAAACAATACGGAAATGACCCTTTCAGCCAATACACTTCAACAACTGGAGGTTTTGAAAAATAACAACGATGGATCTGAGATTGGTTCCTTGCTGCAAATTATGAATCATACTCTTACTATATTTGGTTCTAGACTTCTTAGGCAATGGGTATCTCACCCATTATGTGACCGAACCTTGATCTCTGCACGTCTTCATGCTGTATCTGAAATTGCAGAGTGCATGGGATCTTGTAATGGCACGAACAATCTTGGAGTTGAAGACGATCTCAATGTAGCAATCATGCAACCTGAGTTAGCAAACATTCTTTCATTGGTTTTGACAACTCTTGGCCGAGCACCTGATATACAACGTGGAATTACGAGAATTTTCCATTGTACTGCTTCCCCATCTGAGTTTGTTGCAGTAATTCAAGCTATTCTCTCTGCTGGAAAGCAGCTGCAACAACTTAACATAGGAGAGGGGAATAACACATTGCGCTCCAATCTGTTAAAAAGGTTAATTTTGACTGCTTCTTCTGACAGTATTATTGCTAATGCTGCAAAAATGTTGTCATCTTTAAACACAGACTCTGCTGATCAAGGAGATCTAACAAAATTGATCACTGCTTCGGAGGGACAGTTCCCAGAGGTCACTAAAGCTCGTAAGGATGTCAAGCTGGCAGTGCAACAATTAGATTCGTTGATTGACTTGTATCGCAAATTGCTTAAAATGCAAAAATTGGAATTTATTACTGTTTCTGGAACAACTCATTTGATTGAGTTATCAACAGATGTAAAGGTTCCTTCAAACTGGGCGAAGGTAAATAGCACGAAGAAAACAATTCGGTATCACCCTCCTGAAGTAGTTACAGAATTGGACAGGTTGTCATTAGCAAAAGAGGAGCTCGGTGTTGCTTGCCGAGCTGCCTGGAATAGCTTTCTTAGGGACTTCAGTAAACACTATGCTGAGTTCCAAGCTGCTGTTCAAGCACTAGCAGCTTTAGATTGTCTGTACTCACTTGCCATTCTTTCAAGAAATAAGGGTTATGTTCGCCCTGTGTTTGTACATGACCAAGAGCCTGTTCAGATACAAATTTGTTCTGGTAGACATCCGGTTTTGGAGACCACCTTACAAGAGAATTTTGTCCCAAATGATACAAACTTGCATGCAGATGGAGAGTATTGTCAGATTGTTACTGGACCCAATATGGGTGGAAAAAGTTGCTATGTTCGCCAGGTGGCTCTGATTGCTATAATGGCTCAGGTTGGTTCCTTCGTACCAGCATCATCAGCAAAACTGCACGTCCTGGATAGTATCTACACCCGAATGGGTGCTTCTGACAGTATTCAAGAAGGGAGAAGCACCTTCCTAGAAGAACTAAGTGAGACTTCACATATTCTTCACTGTTGCACAGAACATTCACTGGTTATCATTGATGAACTTGGGAGAGGAACAAGTACACATGATGGTATGGCCATTGCTCACGCGACATTGCATTATCTTCTGAAGCAAAAACGAAGCATGGTCCTCTTTGTTACTCACTATCCAAAGATCGCCAGCTTGTCAACTGAATTTCCTGGCTCTGTAGCAGCATATCACGTGTCACATCTGACCTCACATGATGCAAGTAAAAATTCTAACTTGGATCATGATGTAACTTATCTGTACAAGCTCGCACCTGGTGTTTCAGAGAGGAGTTTTGGATTTAAGGTTGCCCAGCTTGCACAGTTGCCATCGCATTGCATCAGTCGAGCCCTTGTGATGGCTTCCAAATTAGAAGCACTGGTAGATAGTAGGATGCATAGTAGATCGGGAAAGGAGCTATTATTGGATACGCCGGTGATCAGCCAAGAGCAAGAGCAAGAACAGCTTATGGCTCAACCGCATCATCGTCTTCAAGAGTTTGGTATAGCATACAAAGATTTCTATCTAAACTTAAAAGCTGCAATACAAGATGATGACTGTGCAAAAAGCTTTCAATTGTTGAAACATGCTAGAAGCATTGCAAAGAAATTAATTGGCAGTTGA	3219	0.4564	MGKQKQQVISRFFARKAKSPSPPSSPRSNPPTPKISATATFSPSKRRLKSLLTPPRKLQKLQEPSSPSLHQRFLHKFLEPSSPQHPPPPSSSTRPTYTPLEQQVLHLRAKHPDVLLMVEVGYRYRFFGQDAENAARVLGIYAHMDHNFLTASIPTFRLNVHVRRLVSAGYKVGVVRQTETAAIKAHGSNRSAPFGRGLSALYTKATLEAAPEIGGGEDGCSGESNYLLCVVEKSVVGEKGNCGVEGGADVRIGIVAVEISTGDVVYGEFCDGFLRSALEAVVVNLSPAELLLGDPLSKQTEKLLLDFAGPASNVRVERVSRDCFTDGGALSEIMTLYDNVHVDGQPDSLQNKNSREHKSQQLVIKEVLNMPDLSVQALALTIRHLKEFGFERILCSGASLRPLSNNTEMTLSANTLQQLEVLKNNNDGSEIGSLLQIMNHTLTIFGSRLLRQWVSHPLCDRTLISARLHAVSEIAECMGSCNGTNNLGVEDDLNVAIMQPELANILSLVLTTLGRAPDIQRGITRIFHCTASPSEFVAVIQAILSAGKQLQQLNIGEGNNTLRSNLLKRLILTASSDSIIANAAKMLSSLNTDSADQGDLTKLITASEGQFPEVTKARKDVKLAVQQLDSLIDLYRKLLKMQKLEFITVSGTTHLIELSTDVKVPSNWAKVNSTKKTIRYHPPEVVTELDRLSLAKEELGVACRAAWNSFLRDFSKHYAEFQAAVQALAALDCLYSLAILSRNKGYVRPVFVHDQEPVQIQICSGRHPVLETTLQENFVPNDTNLHADGEYCQIVTGPNMGGKSCYVRQVALIAIMAQVGSFVPASSAKLHVLDSIYTRMGASDSIQEGRSTFLEELSETSHILHCCTEHSLVIIDELGRGTSTHDGMAIAHATLHYLLKQKRSMVLFVTHYPKIASLSTEFPGSVAAYHVSHLTSHDASKNSNLDHDVTYLYKLAPGVSERSFGFKVAQLAQLPSHCISRALVMASKLEALVDSRMHSRSGKELLLDTPVISQEQEQEQLMAQPHHRLQEFGIAYKDFYLNLKAAIQDDDCAKSFQLLKHARSIAKKLIGS	1072

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Viun7g03286	1072	ProSitePatterns	DNA mismatch repair proteins mutS family signature.	871	887	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Viun7g03286	1072	PIRSF	Msh6	87	1050	IPR017261	GO:0006298\|GO:0030983
Viun7g03286	1072	PANTHER	DNA MISMATCH REPAIR PROTEIN MUTS FAMILY MEMBER	102	1011	IPR045076	GO:0005524\|GO:0006298\|GO:0030983\|GO:0140664
Viun7g03286	1072	Gene3D	MutS, connector domain	220	408	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Viun7g03286	1072	MobiDBLite	consensus disorder prediction	78	97	-	-
Viun7g03286	1072	SUPERFAMILY	DNA repair protein MutS, domain III	413	743	IPR036187	-
Viun7g03286	1072	SUPERFAMILY	DNA repair protein MutS, domain I	93	206	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Viun7g03286	1072	MobiDBLite	consensus disorder prediction	31	47	-	-
Viun7g03286	1072	FunFam	DNA mismatch repair protein	88	217	-	-
Viun7g03286	1072	Gene3D	-	411	738	-	-
Viun7g03286	1072	SUPERFAMILY	DNA repair protein MutS, domain II	222	344	IPR036678	GO:0005524\|GO:0006298\|GO:0030983
Viun7g03286	1072	Gene3D	-	588	714	-	-
Viun7g03286	1072	Gene3D	-	746	1027	IPR027417	-
Viun7g03286	1072	Pfam	MutS domain II	225	310	IPR007860	GO:0005524\|GO:0006298\|GO:0030983
Viun7g03286	1072	MobiDBLite	consensus disorder prediction	1	67	-	-
Viun7g03286	1072	Pfam	MutS domain V	793	990	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Viun7g03286	1072	Gene3D	DNA repair protein MutS, domain I	89	213	IPR016151	GO:0005524\|GO:0006298\|GO:0030983
Viun7g03286	1072	FunFam	DNA mismatch repair protein MSH3	746	1019	-	-
Viun7g03286	1072	FunFam	DNA mismatch repair protein Msh3	588	714	-	-
Viun7g03286	1072	Pfam	MutS domain III	414	738	IPR007696	GO:0005524\|GO:0006298\|GO:0030983
Viun7g03286	1072	FunFam	DNA mismatch repair protein	221	406	-	-
Viun7g03286	1072	SMART	mutATP5	790	987	IPR000432	GO:0005524\|GO:0006298\|GO:0030983
Viun7g03286	1072	Pfam	MutS domain I	98	208	IPR007695	GO:0005524\|GO:0006298\|GO:0030983
Viun7g03286	1072	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	746	990	IPR027417	-
Viun7g03286	1072	SMART	DNAend	429	773	IPR007696	GO:0005524\|GO:0006298\|GO:0030983

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Viun7g03286	Viun-Chr7	34956652	34965496	Dispersed/Tandem

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Viun7g03286	K08736		-	gmx:100789883	1706.03

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Viun7g03286	7	34956652	34965496	Viun7g03286	7	34956652	34965496	ECH