Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03165 ATGGAGAAGATGCGTCACGCGGAGGAGCTGGTGAGGGAGTTTCTGGTGTTCCGCGGCTTCACCAACACCCTCGAATCATACGAGACCGAATTGCGCACTGACATCGGCAAGGGTTTCGAGGTCGACAAGATCCTCGACCTAATCTTCTCCGTCTACGTTCCAAAGTTCCACGCCGATAAGCTTGTGGCGCTTCTCGGGTTCTTCAAGCACTACCTCTCTTCCTCCTCCGACACGCCGCTCGTCTCCACGCTCTTGAAGTTGGAGGCTTCTATTCTACGCTTTTATGTCGTCCACGCCGTGCAGTGCAACCGCAACGACAAGGTGGTTGAGTTCTTCGCAGTATACGGCACCGAATTGCTGCAGAGGTCGCAAGATTGGACCCAATGGTTCGCAATTCCTTATAAGAAGAACCCGCACTTGGATCCCGAGTTTCGGGTTTTTTTCTCCAAGGAGTGGTATCAGGCATTGCATCTTTCTTCTAGAAACTTCTTCAGCGAGGTTTTCAATGCTACTCGTCTACCTGCACTACTGAAGGTTAGTTCGGAGATGAATGCTACTAATATACTCAAAAGGGATATCGTACAGTTAAATCTGAAGTTATCCCAACTTCAGGGTTTGCTTGATGAGAAAGAGGCACAGTTACGTCAATTTAGAAGTATGGATGGGAGTACTGGTTCATCAAGCAATTTACGTGAAGAAACTGCTCGTACGGTGAAAAGTTCTCCGGATGTTTTTCCAACTACCACTTCACAAGTAGTTCAAATCGAGGTTATCCAAGATTTAGCGGTGGGTGAACTCGGAAATGTTCATTCCGAGTTGATTGGCTCCACATCTTGTGATGATTCAGCATTTCTATCGGAAGACTGTTTGAGGAATGGCGGAGCTGACGATGCCAGTCTAAAAGAAAACGATGGGGATGAGGATTTTGCTGAGGTCAACTTAGAGCACCAGGAGACATTTTTGGGGCACACTAGTCCAATCAGTCGATGCCGCTTCTCTGCATCTGGAAACAATATTGCCAGTGCTTCTCTGGATGGAACTGTCAGGATATGGACTTATGATACATCAACACCAGTGTCTAGAAACGCAACCATATATTGTGGCACTGAAATTTTGTCCCTTGACTGGGAATGTAAATCCGACCGCTTGCTTCTTATTGGTACATCCGATGGGTGCATTAAAGCATGGAATGTGGATGCAAAGAGAGTTGTCTGTGATCTCAGCACAACTGAATCATTTCCAAGTGTATTGGACATAAAGTGCAGTCCTGTGGAACCTATTTTTGTGTCTGCAGCAGCATCTGGAGGTGCTGGTTCCAAATATGTTGACAACCTGGGTTTCGCTTCTCTGACTGTGTGGAACATGAAGACATGGAAAGCCATGACAGTCCTTCCTCTTGGAGAAGATCCCCCAGCAATAACTTCTCTATGCTTTAATCACAATGGAAAGATTTTGGCAGCTGCTGCAGTTGATGGAATGATTCACATGTTTGACATGTCTGCTGGTCTACAAATCACTGGCTGGCCAGCACATGATTCTTCCATCAGTTCTATTTTGTTTGGACCAGACGAGACTAGCATTTTTAGCCTTGGCTCTGATGGGAAGATTTTTGAGTGGAGCTTGCAAAATCAAGGTCAAATCCTGTGGTCGAGAGACTGTAGTAGGTTCTGTTACCCCCTCAACGATTCAAAATATTTCAGACACGAGATGGCATTAGACGCAAATGGGAGGAGACTCTTGGTAACATCAAGTTCAGTCAGAGCACCCATATATCAGGTTCATGGTCAGCTAAGTGGTTGGAGAACACTTCCGCACGGTGCTCCTATTACTGCCGTAGATTGGCATCCGACCCTGCCCATTTTCTTGACTGGATCAGCTGATAACTCCGTCCGAGTAACATCTTTGTCATAG 1911 0.4636 MEKMRHAEELVREFLVFRGFTNTLESYETELRTDIGKGFEVDKILDLIFSVYVPKFHADKLVALLGFFKHYLSSSSDTPLVSTLLKLEASILRFYVVHAVQCNRNDKVVEFFAVYGTELLQRSQDWTQWFAIPYKKNPHLDPEFRVFFSKEWYQALHLSSRNFFSEVFNATRLPALLKVSSEMNATNILKRDIVQLNLKLSQLQGLLDEKEAQLRQFRSMDGSTGSSSNLREETARTVKSSPDVFPTTTSQVVQIEVIQDLAVGELGNVHSELIGSTSCDDSAFLSEDCLRNGGADDASLKENDGDEDFAEVNLEHQETFLGHTSPISRCRFSASGNNIASASLDGTVRIWTYDTSTPVSRNATIYCGTEILSLDWECKSDRLLLIGTSDGCIKAWNVDAKRVVCDLSTTESFPSVLDIKCSPVEPIFVSAAASGGAGSKYVDNLGFASLTVWNMKTWKAMTVLPLGEDPPAITSLCFNHNGKILAAAAVDGMIHMFDMSAGLQITGWPAHDSSISSILFGPDETSIFSLGSDGKIFEWSLQNQGQILWSRDCSRFCYPLNDSKYFRHEMALDANGRRLLVTSSSVRAPIYQVHGQLSGWRTLPHGAPITAVDWHPTLPIFLTGSADNSVRVTSLS 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03165 636 Coils Coil 193 220 - -
Viun7g03165 636 ProSiteProfiles Trp-Asp (WD) repeats profile. 508 543 IPR001680 GO:0005515
Viun7g03165 636 MobiDBLite consensus disorder prediction 219 243 - -
Viun7g03165 636 Gene3D - 268 437 IPR015943 GO:0005515
Viun7g03165 636 Gene3D - 444 636 IPR015943 GO:0005515
Viun7g03165 636 SMART WD40_4 358 397 IPR001680 GO:0005515
Viun7g03165 636 SMART WD40_4 501 540 IPR001680 GO:0005515
Viun7g03165 636 SMART WD40_4 457 498 IPR001680 GO:0005515
Viun7g03165 636 SMART WD40_4 313 352 IPR001680 GO:0005515
Viun7g03165 636 SMART WD40_4 596 634 IPR001680 GO:0005515
Viun7g03165 636 ProSiteProfiles Trp-Asp (WD) repeats profile. 602 636 IPR001680 GO:0005515
Viun7g03165 636 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 320 355 - -
Viun7g03165 636 SUPERFAMILY WD40 repeat-like 307 632 IPR036322 GO:0005515
Viun7g03165 636 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 602 636 - -
Viun7g03165 636 ProSiteProfiles Trp-Asp (WD) repeats profile. 320 361 IPR001680 GO:0005515
Viun7g03165 636 PANTHER OS05G0299300 PROTEIN 1 635 - -
Viun7g03165 636 Pfam Anaphase-promoting complex subunit 4 WD40 domain 467 520 IPR024977 -
Viun7g03165 636 Pfam WD domain, G-beta repeat 316 351 IPR001680 GO:0005515
Viun7g03165 636 Pfam WD domain, G-beta repeat 605 632 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03165 Viun-Chr7 34251061 34258719 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03165 K24760 - gmx:100795332 1132.09
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g03165 7 34251061 34258719 Viun7g03165 7 34251061 34258719 ECH