Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g03008 ATGGATACATCTTCTTCTCCATATGCACTCATCTTTGCATGTTTGCTACGGGCAATGATGTTCGACGCCGGTACTTGCAACTTCAATAATCGCTGCAGCGAAAAAGATACACAAGCTCTCTTAAACTTCAAAAAAGGAATCATGGATCCATCAGGCGTACTTTCTTCATGGTCCACTCAACACAATTGTTGTGAATGGAAAGGAGTTACGTGTGACAGAATCAACAATAGAGTCACTCACCTCAGTCTCCCATGTTTTACAACTACTCTAAATTACATTGACAAAGAAGATAAATCACACTGCCTCACAGGTACCTTTTCCTTTTCCCTGTTAATGGAGTTGGAATTTCTAAGCTACTTGAATTTGAGAAATAACGACTTCTTAGCTATCCAGTTTGATTCTGTGCATAATCACAATTATTATTCTAACCTATCTGTATCTAATCGTCCTCGGCAATTTCTCAACTCATCAACACTTCGTCATCTTGATCTGTCCTTTAACGAGAATCTTGTCATAAATAGTCTTCAATTTCTTTTTCGTATGTCCTCCTTGGAAAATCTTTACATCAGTGGCGTTGATCTTCACATGGAAACTAACTGGCTTCAACTAGTCACTATGCTACCATCGCTTTCAGTGCTCCAAATGAGTTATTGCCAACTTAAAGATTTGAGTCCATCTCTTCAACATGCTAATTTTACTGCACTCAAAATTCTTGATCTATCAGGAAATAAATTTCACTCAGAGTTACCTAAATGGTTATTCAATCTTAGTTGTGGTGTCTCTAGTATTTCTATTGGTTTATGTTCTTTAACAGGACAACTTCCTAAGGCATTGTTAAATCTTCGACACTTGGAAAAACTGTTTTTGCTAAACAATGACCTCAATGGACCAATACCAGACTGGATAGGAGTTGTGTCAGAGAGAAATTTTGCCAAAATGTCAAAATTAAAGAGCTTGGATATACAGTCTTCACCACCATTAATCTTTGATTTTGACTCCCACTGGATTCCACCTTTTCAACTTGAAGCACTAAGTCTCTCATTTTCAGGTCCTCACCTCCCTGCATGGTTATATACTCAAAGATCTATTCAGAGTTTATCTATTTATGGATCATGGTTTCAGGCCCCAGACAAATTTTGGAATTTTGTATCAAGGGTGCCCGAACTCACTTTAGAAGATAATTCGATAGTTGGGAACCTATCAAACATATTGTTAAACTCTACAGTCATACGTTTGTCATCAAATAGGTTGAAAGGTTCCCTGCCTCGATTATCCCCGAATGCAGCTGTTGTCAGTTTATCAAACAACTCATTATCAGGAAGTATCTCTCCACTCTTGTGTGATCATAAGATGCTGAATGGGAAAAGCAATTTGGTGTACTTGGATATATCTCTGAATCATTTATCTGGAGGTCTTACAAATTGCTGGGAGAAATGGAAATCACTGATTCATGTTAATTTAGGAGGCAATAATTTAACAGGCAAAATACCCCCATCAATGGGTCTGTTATCTAATCTTACCTCGCTACATCTGCATGAGAATAAGCTCTACGGAGAGATTCCTCCATCGCTACAAAATTGCCACATACTGATCTTCAACGTTCGTGGAAACAACTTCACAGGAAATATACCAAATTGGATACCGCATGCTGCAAAGGTTCTCGAATTCAGATCCAATCATTTTAGCGGTAGCATCCCAGCACAAATATGCCAAATGTCTTCCCTCTTTATTTTGGATATTGCAGATAACACAATCTCAGGACACATACCCACCTGCCTATGTAATATCACAGCCTTAAACAATGTTTCCCACAGGGAGTTTTCTTCAACAACCCTACAATACAATTTCTTAAATAGAACTTTTTACTTCTTTGAAGAAAGTCTTGAGCTGGTCACAAAAGGCCTGGTATTAGAATATGAGAATAACCTGCCCTTTATGAACTTAATTGACATGTCAAGTAACAATTTATCTGGAACAATTCCTCTCCAAATGTTTAGCCTCATTGGATTGGCTTCTTTGAACTTGTCCCACAATAAATTAACAGGAAAATTACCCGATGAGATTGGCAACATGAAAAATTTGGAATCCCTTGATTTTTCTGTGAATCAGTTTTCGGGTGAAATTCCTGAGGCCTTGTCCAAAGTGTCCTTTCTCGGATTCTTAAACCTATCATTCAACAATTTCACTGGCAAAATCCCATCTGGCACACAACTTCAAGGGTTTGATGCAATCAGCTATATTGGCAATTCTGATCTTTGTGGACCTCCACTTACAAAAATATGCTTCAAGTCCTCAGATGATAAATCTAAAGACACAAAGCCAATAGATGAAGATGGAGATAAATCTGAATTTTTTCCATGGTTTCATATTGGACTAGAATCTGGATTTGTGGCAGGCTTTTTGGGAGTTTTCTGTTCCATTCTCTTAAATAGAAAATGGAGAGAAGCTTAG 2451 0.3774 MDTSSSPYALIFACLLRAMMFDAGTCNFNNRCSEKDTQALLNFKKGIMDPSGVLSSWSTQHNCCEWKGVTCDRINNRVTHLSLPCFTTTLNYIDKEDKSHCLTGTFSFSLLMELEFLSYLNLRNNDFLAIQFDSVHNHNYYSNLSVSNRPRQFLNSSTLRHLDLSFNENLVINSLQFLFRMSSLENLYISGVDLHMETNWLQLVTMLPSLSVLQMSYCQLKDLSPSLQHANFTALKILDLSGNKFHSELPKWLFNLSCGVSSISIGLCSLTGQLPKALLNLRHLEKLFLLNNDLNGPIPDWIGVVSERNFAKMSKLKSLDIQSSPPLIFDFDSHWIPPFQLEALSLSFSGPHLPAWLYTQRSIQSLSIYGSWFQAPDKFWNFVSRVPELTLEDNSIVGNLSNILLNSTVIRLSSNRLKGSLPRLSPNAAVVSLSNNSLSGSISPLLCDHKMLNGKSNLVYLDISLNHLSGGLTNCWEKWKSLIHVNLGGNNLTGKIPPSMGLLSNLTSLHLHENKLYGEIPPSLQNCHILIFNVRGNNFTGNIPNWIPHAAKVLEFRSNHFSGSIPAQICQMSSLFILDIADNTISGHIPTCLCNITALNNVSHREFSSTTLQYNFLNRTFYFFEESLELVTKGLVLEYENNLPFMNLIDMSSNNLSGTIPLQMFSLIGLASLNLSHNKLTGKLPDEIGNMKNLESLDFSVNQFSGEIPEALSKVSFLGFLNLSFNNFTGKIPSGTQLQGFDAISYIGNSDLCGPPLTKICFKSSDDKSKDTKPIDEDGDKSEFFPWFHIGLESGFVAGFLGVFCSILLNRKWREA 816
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g03008 816 SUPERFAMILY RNI-like 389 735 - -
Viun7g03008 816 Gene3D Ribonuclease Inhibitor 28 153 IPR032675 -
Viun7g03008 816 Gene3D Ribonuclease Inhibitor 194 305 IPR032675 -
Viun7g03008 816 PANTHER LRR RECEPTOR-LIKE KINASE 32 816 - -
Viun7g03008 816 SMART LRR_typ_2 232 256 IPR003591 -
Viun7g03008 816 SMART LRR_typ_2 114 137 IPR003591 -
Viun7g03008 816 SMART LRR_typ_2 667 691 IPR003591 -
Viun7g03008 816 SMART LRR_typ_2 207 229 IPR003591 -
Viun7g03008 816 SMART LRR_typ_2 503 526 IPR003591 -
Viun7g03008 816 FunFam Tyrosine-sulfated glycopeptide receptor 1 528 766 - -
Viun7g03008 816 Pfam Leucine rich repeat N-terminal domain 34 72 IPR013210 -
Viun7g03008 816 Gene3D Ribonuclease Inhibitor 306 764 IPR032675 -
Viun7g03008 816 SUPERFAMILY RNI-like 102 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g03008 Viun-Chr7 33079544 33082648 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g03008 19 813 Miscellaneous Gene Families AT1G74190 27.554 4.41e-65 233
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g03008 - - var:108324730 1343.18
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g03008 7 33079544 33082648 Viun7g03008 7 33079544 33082648 ECH