Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g02250 ATGGACTCCATTATCGCTTCTTCGCCACTTCAATTTCCTCACCGTCCTCTCTTCACTTCCATTCGCCCCATCCCTATCCGAACTCTTATCTCCAATTCCCGCAGAACACCACGAACCCCACTCTCACTCGTTCCCATCGCTTTTACTCCACCAATCACTTCCGCCTCCAAGTCAACCACACTCGCGTCCTCTCCGAGCGACGACGTTTTCTTGAAACAACTTGTTCGCGCGCTCTTCTGCTTCGCCGTTGGTTTCTCCGCCCTCGGCGCATTCCGCACTCCTCCTCCCGCACTTGCAATTGCAGTTCCGTGGAATGTATTCGGAACGAGAGGCGCCGAGAAAGAGAAAGCGAAGAGTCACAAGTACTCGGACTGTACCGATAAGTTGTTGGAGACGGTGTCGCTTTTGTTGGGAGCCGTAGATGAAGCTAGGAAGGGGAATGGTGACGTGAGCGAGGTGGAGGCGGCGTTGAAGGCCGTGAAATCGAAGAAGCAAGAGATGAAAAAAGCTATTGACAGGAAGCTCTACCCGGCGTTGAGGAAGCTGAGGAATGAAAAGAAGGCGTTGTGGAAACGGTCCGGGGAGATTCTCGGCGATATATTGAAGGCAACGGCGGAGTACGATAGATTGAAGACGAAGGCAGTGGCAAATGAGAAGGAGAAGGCAAGGATGATGGAGTTGGAGGAGATTGTGCGGAAGATGGAGAATGAGTACAATGAGGGGTGGGAGAGAGTTGGGGAAATCGAGGACCAGATTTCGAGGGAGGAGACGGTGGCGTTGAGTTATGGGGCGAGGGAAATCAATTTCATAGAGAAGGAGTGTGAACAGCTAGTGGAGAGGTTCAAACAGGAAATTAGGCGCAAGGACTTCGAAAGTTTGCCTACTGGCCCAGTTACCAGGCTCTCAAAATCTGTCATTCAAAAAGATTTGGAAACTGTACATAGAAAACATGCTGAACAAATAATTCTTCCTAGCATTTTGGATGTTGAAGATCTTGGGCCATTCTTTCATCAAGAGTCTATTAATTTTGCGCAGCGTTTGAAAAGAGTTCTTAAAGATTCGAGGGAGAAGCAAAGGAATTTAGAGGCTCAGATAAGAAAAAAAATGAAGAAGTTCGGCAAGGAAAAGCGTAATATTATTTACTCACCACACGAAGACGTGCTCAAGGGCTTTCCTGAAGTTGAGTTAAAGTGGATGTTTGGAAATAAGGAGGTTGTGCTTCCCAAAGCTGTTGGTCTCCATCTATACCATGGTTGGAAGAAATGGCGTGAAGAAGCTAAGGCAAATTTAAAACAGAGTTTGATAAAAGATGCTGAATTTGGCAGACAATATGTGGCCGAAAGACAGGAACGGATTCTTTTGGACCGTGACAGAGTAGTTTCAAGGACTTGGTATAATGAAGAGAAGAAAAGATGGGAGATGGATCCTGTGGCTGTTCCTTATGCTGTCTCAAAAAGGCTAATAGAGTATGTTCGCATTAGGCATGATTGGGGTGCCATGTATATCGTATTAAAGGGGGAGGACAAACAATTTTATGTAGACATAAGGGAATTTGAAATGGTTTTTGAAGATTTGGGGGGATTTGATGGGCTGTATATGAAAATGCTTGCATGTGGTATTCCAACAGCGGTTCATCTCATGTGGATTCCTTTCTCTGAATTGAATATCCGCCAACAGCTTCTCTTGATATTAAGAGTGTGTAATGGGATTGTTAGTGGCTTGTGGAATTCTAGAGTTGTCACACAAGCGAAAAATTGGACCTTTACCCAAATTAAGGATACCACTGATGACATAATGGTGCTGATGGTGTTTCCTATTGTAGAATTTTTAGTCCCATACCCGGTGAGGATACAATTGGGAATGGCTTGGCCGGAGGAAATATACCAGACAGTTGACACCACATGGTACTTGAAATGGCAATCAGAGGCAGAATCAAATTTTAAATCCAGACAACCAGCAGTCGAGGATGGAGAAAGTTCATGGTCTTTTAAGTTTTTGGTCAGAGCTGCTATATATGGTTTTGTTTTGTTTCATGTGGTCAAATTTATGAGGAGAAAACTTCCTAGACTTCTTGGGTTTGGGCCTTTGCGAAGAAACCCAAATCGGCGGAAGTTGCGGCGAGTGAAGTATTACATTGGTCAAAAATTGAAAAAAATCAAGCAGAGGAGGAAGGATGGCTTTGATCCCATAAAGACCGCATTTGAACAGATGAAGAGAGTGAAGAAACCGCCAATACCATTGAAGAACTTTGCTAGCGTCGAGTCTATGAAAGAGGAAATCAATGAAGTTGTGGCATTTTTGCAGAATCCAAGGGCATTCCAAGAGATGGGTGCACAGGCGCCTCGGGGTGTTCTTATTGTAGGTGAGAGGGGTACCGGTAAGACATCTCTAGCATTGGCTATCGCTGCTGAGGCTAAGGTGCCTGTTGTTGAAATTAAGGCTCAGCAATTGGAGGCTGGGCTGTGGGTTGGACAAAGTGCCTCCAATGTTCGTGAATTGTTTCAGACAGCAAGAGATCTGGCTCCTGTGATAATATTTGTGGAAGATTTTGATCTGTTTGCTGGTGTACGTGGTACATATATTCATACCAAAAATCAAGATCATGAAACTTTCATCAATCAACTGCTCGTGGAACTTGATGGATTTGAGAAACAAGATGGAGTTGTTTTGATGGCTACTACAAGAAATCTCAAGCAAATTGATGAGGCCTTGCAGAGGCCAGGTCGCATGGATAGAATATTTCATCTTCAAAGACCGACACAAGCTGAGAGAGAAAAAATATTGTACTTGGCAGCAAAAGAAACCATGGATGATCAGCTTATTGATTATGTTGACTGGAAAAAGGTTGCTGAGAAGACAGCTCTTTTACGGCCTATTGAATTAAAAGTTGTTCCAATGGCTTTGGAGGGAAGTGCCTTCCGGGGCAAAGTTCTTGACACTGATGAATTGATGGGCTACTGTGGTTTCTTTGCGACTTTCAGCTCTATGGTTCCCTCATGGTTGCGGAAGACCAAGGTTTTCAATAAGTTTAGCAAAGCAATGGTGAATCATCTTGGGCTGACATTGACAAAAGAAGATCTGCAAAATGTTGTCGATTTGATGGAACCATATGGCCAAATAAACAATGGGATAGAGTTTTTGAGCCCTCCACTTGATTGGACAAGGGAAACGAAGTTTCCACATGCTGTCTGGGCAGCTGGTCGTGGTCTCACTGCTCTTTTATTACCCAATTTTGATGTTGTTGATAATCTTTGGCTTGAACCTCAATCATGGCAGGGAATTGGATGTACAAAAATCACAAAAGCAAGAAATGAGGGTTCCATCAATGGGAATTCAGAATCAAGATCATATCTCGAGAAGAAGCTTGTATTTTGTTTTGGTTCTTATGTTGCATCCCAAATGTTACTTCCTTTTGGGGAAGAAAACTTGCTTTCTATTTATGAGATACAGCAGGCGCAAGAGATAGCTACTCGAATGGTCATTCAGTATGGGTGGGGACCCGACGACAGTCCTGCAATTTACTACCACAGTAATGCGGTCACGGCATTAAGTATGGGGGATGACCATGAATATGTGATGGCAGCTAAAGTTGAAAAGATGTTCGATTTGGCATATCTCAAAGCAAGAGAAATGCTGCTGAAAAATCGCCCAGTACTAGAAAAGATAGTGGAGGAGTTGCTTGAGTTTGAAATTTTGACTGGGAAGGATTTAGAAAGAATTACTAAAAATAATGGTGTAATCAGGGAGAAAGAGCCATTTACGCTTGGTGAAATCCAAGCTAGTGAGCCAACATCTGTCAGCTTACTTGAAAGAAGAAGTGCACCAGGAAGTGCTCTACTAGCATCCTAG 3849 0.4375 MDSIIASSPLQFPHRPLFTSIRPIPIRTLISNSRRTPRTPLSLVPIAFTPPITSASKSTTLASSPSDDVFLKQLVRALFCFAVGFSALGAFRTPPPALAIAVPWNVFGTRGAEKEKAKSHKYSDCTDKLLETVSLLLGAVDEARKGNGDVSEVEAALKAVKSKKQEMKKAIDRKLYPALRKLRNEKKALWKRSGEILGDILKATAEYDRLKTKAVANEKEKARMMELEEIVRKMENEYNEGWERVGEIEDQISREETVALSYGAREINFIEKECEQLVERFKQEIRRKDFESLPTGPVTRLSKSVIQKDLETVHRKHAEQIILPSILDVEDLGPFFHQESINFAQRLKRVLKDSREKQRNLEAQIRKKMKKFGKEKRNIIYSPHEDVLKGFPEVELKWMFGNKEVVLPKAVGLHLYHGWKKWREEAKANLKQSLIKDAEFGRQYVAERQERILLDRDRVVSRTWYNEEKKRWEMDPVAVPYAVSKRLIEYVRIRHDWGAMYIVLKGEDKQFYVDIREFEMVFEDLGGFDGLYMKMLACGIPTAVHLMWIPFSELNIRQQLLLILRVCNGIVSGLWNSRVVTQAKNWTFTQIKDTTDDIMVLMVFPIVEFLVPYPVRIQLGMAWPEEIYQTVDTTWYLKWQSEAESNFKSRQPAVEDGESSWSFKFLVRAAIYGFVLFHVVKFMRRKLPRLLGFGPLRRNPNRRKLRRVKYYIGQKLKKIKQRRKDGFDPIKTAFEQMKRVKKPPIPLKNFASVESMKEEINEVVAFLQNPRAFQEMGAQAPRGVLIVGERGTGKTSLALAIAAEAKVPVVEIKAQQLEAGLWVGQSASNVRELFQTARDLAPVIIFVEDFDLFAGVRGTYIHTKNQDHETFINQLLVELDGFEKQDGVVLMATTRNLKQIDEALQRPGRMDRIFHLQRPTQAEREKILYLAAKETMDDQLIDYVDWKKVAEKTALLRPIELKVVPMALEGSAFRGKVLDTDELMGYCGFFATFSSMVPSWLRKTKVFNKFSKAMVNHLGLTLTKEDLQNVVDLMEPYGQINNGIEFLSPPLDWTRETKFPHAVWAAGRGLTALLLPNFDVVDNLWLEPQSWQGIGCTKITKARNEGSINGNSESRSYLEKKLVFCFGSYVASQMLLPFGEENLLSIYEIQQAQEIATRMVIQYGWGPDDSPAIYYHSNAVTALSMGDDHEYVMAAKVEKMFDLAYLKAREMLLKNRPVLEKIVEELLEFEILTGKDLERITKNNGVIREKEPFTLGEIQASEPTSVSLLERRSAPGSALLAS 1282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g02250 1282 Pfam ATPase family associated with various cellular activities (AAA) 784 917 IPR003959 GO:0005524|GO:0016887
Viun7g02250 1282 Coils Coil 150 173 - -
Viun7g02250 1282 Coils Coil 267 287 - -
Viun7g02250 1282 Gene3D - 728 937 IPR027417 -
Viun7g02250 1282 SMART AAA_5 780 920 IPR003593 GO:0016887
Viun7g02250 1282 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 741 952 IPR027417 -
Viun7g02250 1282 Coils Coil 344 371 - -
Viun7g02250 1282 FunFam ATP-dependent zinc metalloprotease FtsH 3 1052 1249 - -
Viun7g02250 1282 SUPERFAMILY FtsH protease domain-like 1054 1251 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Viun7g02250 1282 Pfam Peptidase family M41 1066 1240 IPR000642 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Viun7g02250 1282 Gene3D Peptidase M41 1052 1251 IPR037219 GO:0004176|GO:0004222|GO:0005524|GO:0006508
Viun7g02250 1282 FunFam ATP-dependent zinc metalloprotease FtsH 3 726 937 - -
Viun7g02250 1282 Coils Coil 217 237 - -
Viun7g02250 1282 PANTHER METALLOPROTEASE M41 FTSH 351 1243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g02250 Viun-Chr7 26874177 26903079 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g02250 747 1240 Miscellaneous Gene Families AT5G53170 28.827 1.43e-39 157
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g02250 - - gmx:100794385 2178.67
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g02250 7 26874177 26903079 Viun7g02250 7 26874177 26903079 ECH