Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01971 ATGCTGCAGTGCATATTTCTCCTCTCAGATGCCGGAGAGGTAGTGCTAGAGAAACAGCTTTCGGGGCACCGCGTCGATCGCTCCATTTGTGCCTGGTTCTGGGAACAAGCCGTTTCGCTTGGCGACTCCTTCAAGCAACAACCAGTGATCACCTCTCATTCGCATTACATTTTCCAAGTTTTTCGCGATGGAATCACTTTTTTGGGGTGCACGCAAATTGAAATGCCACCCTTGATGGCCATTGAGTTCCTTTGTAGGGTTGCTGATGTTCTCAATGATTATTTTGGGGCCTTAAACGAAGATATAATTAAAGACAACTTTGTCATTGTGTACGAGCTGTTGGATGAGATGATAGACAATGGCTTCCCCTTAACTACAGAACCTAGTATCCTGCGAGAAATTATTAATCCACCAAATGTGGTTAACAAAGCTTTGAGTATTGTGACTGGTAGCAATTCAAATGTGAGTGATGCCCTTCCGAGGGCTACTGCATCTTGTATTCCCTGGAGAACAGCAGAGCCAAAGTACTCCAACAATGAAGTATATGTAGACCTTGTCGAAGAAATGGATGCGATTATTAACAGGGATGGAGGTTTGTTGAAATGTGAGATCTATGGTGAAGTTCAAGTAAATTCTCGTATTTCAGGTTTTCCTGATTTGACCCTTTCATTTACAAATCCTTCCATCCTAGATGATGTCAGGTTCCATCCGTGTGTTCGTTTTCGGCCTTGGGAGTCTCATCAAATTCTTTCTTTTGTGCCTCCTGATGGACAATTTAAGCTTATGAGTTACAGAGTAAGAAAGTTGAAGAGCACACCAATATATGTAAAGCCGCAGTTAATATCTGATGGTGGGACATGCCGTCTTAGTGTAATGGTTGGAATAAGAAATGATCCTGGAAAGACAATCGACTCGGTTACTGTTCAGTTTCAGCTCCCTCCTTTCATCTTGTCAGCTGATCTCACTTCAAATCATGGAACAGTGACCATCCTTGCTAAAAAGACATGCATATGGTCCATTGGTCGGATTCCAAAAGATAAAGCTCCTTCCATGTCTGGATTATTGGTGATTGAAAGTGGTTTGGAGCGGCTTCATGTCTTCCCCTCATTTCAAGTGGGGTTTAGGATTATGGGTGTCGCCCTCTCTGGTCTGCAAATAGATAAACTGGATCTGAAGAATGCTGCAGCATACCGATTTTACAAAGGTTTTAGAGCTCTTACTCGGGCAGGTCAATTTGATGTAAGATCATAA 1251 0.4277 MLQCIFLLSDAGEVVLEKQLSGHRVDRSICAWFWEQAVSLGDSFKQQPVITSHSHYIFQVFRDGITFLGCTQIEMPPLMAIEFLCRVADVLNDYFGALNEDIIKDNFVIVYELLDEMIDNGFPLTTEPSILREIINPPNVVNKALSIVTGSNSNVSDALPRATASCIPWRTAEPKYSNNEVYVDLVEEMDAIINRDGGLLKCEIYGEVQVNSRISGFPDLTLSFTNPSILDDVRFHPCVRFRPWESHQILSFVPPDGQFKLMSYRVRKLKSTPIYVKPQLISDGGTCRLSVMVGIRNDPGKTIDSVTVQFQLPPFILSADLTSNHGTVTILAKKTCIWSIGRIPKDKAPSMSGLLVIESGLERLHVFPSFQVGFRIMGVALSGLQIDKLDLKNAAAYRFYKGFRALTRAGQFDVRS 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01971 416 PANTHER AP COMPLEX SUBUNIT MU 1 415 - -
Viun7g01971 416 Gene3D - 1 142 - -
Viun7g01971 416 PIRSF AP_complex_mu 1 416 IPR001392 GO:0006886|GO:0016192|GO:0030131
Viun7g01971 416 SUPERFAMILY Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor 167 415 IPR036168 -
Viun7g01971 416 PRINTS Clathrin coat assembly protein signature 230 257 IPR001392 GO:0006886|GO:0016192|GO:0030131
Viun7g01971 416 PRINTS Clathrin coat assembly protein signature 337 348 IPR001392 GO:0006886|GO:0016192|GO:0030131
Viun7g01971 416 PRINTS Clathrin coat assembly protein signature 100 127 IPR001392 GO:0006886|GO:0016192|GO:0030131
Viun7g01971 416 Gene3D Mu homology domain, subdomain B 272 413 - -
Viun7g01971 416 Gene3D Mu homology domain, subdomain B 167 411 - -
Viun7g01971 416 SUPERFAMILY SNARE-like 1 143 IPR011012 -
Viun7g01971 416 CDD AP-3_Mu3_Cterm 167 415 - -
Viun7g01971 416 CDD AP3_Mu_N 3 142 - -
Viun7g01971 416 ProSiteProfiles Mu homology domain (MHD) profile. 178 415 IPR028565 -
Viun7g01971 416 Pfam Adaptor complexes medium subunit family 167 415 IPR028565 -
Viun7g01971 416 FunFam AP-2 complex subunit mu, putative 1 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01971 Viun-Chr7 24761032 24763496 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01971 K12398 - gmx:100782926 773.852
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01971 7 24761032 24763496 Viun7g01971 7 24761032 24763496 ECH
Viun1g02967 1 38386154 38389456 Viun7g01971 7 24761032 24763496 PCT