Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun7g01897 ATGGCACTCTCATTCTCCTCGAAGGGTGTCTTTCTCTGCACCTTCTTATTCTGCTTATCATTGGCCTCCGAAGCTCGTAGATCACCCGTTTCTTCTGTGGTTAGCGAGGACCTTTTCAATTCCATTTTCCTTCACAAAGACAACGCTGCATGCCCCGCTAAAAACTTCTACACCTACGATTCCTTCATCATGGCATGCACAAGATTCCCTCAATTTGGTTCTCGAGGTAGTTCAATCACACGCAAGCGTGAGGTTGCGGCGTTTCTTGCTCAAATTTCTCAAGAAACCACCGGTGGCTGGGCTACTGCACCCGACGGACCCTATGCTTGGGGTTTGTGCTTCAAGGAAGAAGTTAGTCCTCAGAGTGACTACTGCAATTCCACCAACCAACAATGGCCTTGCTACCCAGGAATAACTTATAAAGGAAGAGGACCAATTCAACTTTCATGGAACTACAACTATGGACCGGCAGGGGAGGCTTTGGGATTTGATGGATTGAGAAACCCTGATGTGGTGTCAAACAATTCAGTGATTGCCTTTGAAACAGCTTTGTGGTTTTGGATGACAGAGCAAAAGCCGAAACCTTCTTGCCACAATGTGATGATTGGAAAATATGTGCCCACAGAAGCTGACATAGCAGGTAATAGAACTGCAGGGTATGGTCTTGTGACTAACATAATCAATGGTGGACTTGAATGTGGAATTCCTGGTGATTCAAGGATGAATAATCGCATTCAATTCTTCAAAAGATATGCAACATTGTTCAATGTAGATACAGGACCTAACTTGGATTGTGCATATCAGAAACCCTTTTAA 816 0.4449 MALSFSSKGVFLCTFLFCLSLASEARRSPVSSVVSEDLFNSIFLHKDNAACPAKNFYTYDSFIMACTRFPQFGSRGSSITRKREVAAFLAQISQETTGGWATAPDGPYAWGLCFKEEVSPQSDYCNSTNQQWPCYPGITYKGRGPIQLSWNYNYGPAGEALGFDGLRNPDVVSNNSVIAFETALWFWMTEQKPKPSCHNVMIGKYVPTEADIAGNRTAGYGLVTNIINGGLECGIPGDSRMNNRIQFFKRYATLFNVDTGPNLDCAYQKPF 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun7g01897 271 Gene3D Endochitinase, domain 2 116 174 - -
Viun7g01897 271 FunFam Endochitinase (Chitinase) 116 174 - -
Viun7g01897 271 CDD chitinase_GH19 34 265 - -
Viun7g01897 271 Pfam Chitinase class I 33 265 IPR000726 GO:0004568|GO:0006032|GO:0016998
Viun7g01897 271 SUPERFAMILY Lysozyme-like 30 271 IPR023346 -
Viun7g01897 271 Gene3D - 37 271 - -
Viun7g01897 271 PIRSF Endochitinase 3 271 IPR016283 GO:0004568|GO:0005975
Viun7g01897 271 PANTHER CHITINASE-RELATED 22 269 - -
Viun7g01897 271 ProSitePatterns Chitinases family 19 signature 1. 51 73 IPR000726 GO:0004568|GO:0006032|GO:0016998
Viun7g01897 271 ProSitePatterns Chitinases family 19 signature 2. 178 188 IPR000726 GO:0004568|GO:0006032|GO:0016998
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun7g01897 Viun-Chr7 24115611 24116680 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun7g01897 10 271 Glycoside Hydrolase AT1G02360 71.212 4.13e-145 408
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun7g01897 - - vra:106754841 530.791
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun7g01897 7 24115611 24116680 Viun7g01897 7 24115611 24116680 ECH
Viun1g02900 1 37900493 37901755 Viun7g01897 7 24115611 24116680 PCT