Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02976 ATGGCTTCCGCCGTCCTTGCTAACCGGAACGAACCGAATTGGCCACAGCATAGAGGCGGTGGAGCTGGATTCATGGGAAAAGTACCTTTCTCTAACCCTAACCCTAATTCCAATCCTAAATTAGCGAATAGCAAAAGGACCCAATCGGCGTCCGACGATGCTTCCTCTATCAACAGGAGATCGAACGACGCTGGCGTAAGTCACTCTCAATACGTGTGCTTCAGCATCTCTACGTGCACAAAGAAGGAGCTCAACGACATAAAAAATCGCCTTGTGTCGGAGCTTGAACAGGTTCGTAAGTGCAGAAATCGAATCGAATCCGGCGAGTTACAGCCCGGGCAGAGCTCCAACGGTCACCCGAAGAAACCGTCAAGCAAAAAGGTTTCCGGCAACAAACGACCCTTACCGTTGAATTCCGTGAAGGAATTGAAACGGTCGCATTCGGAAGTTGGGAACTCAATGAAGGTTTGCTCGCAGATTTTGCAGAAGCTGATGAAACACAAACATGGGTGGATCTTCAATGTTCCTGTTGATGTTGTCGGAATGGGTCTCCACGATTACTATGATATAATTAAGCAACCTATGGATCTTGGTACTGTGAAGTCGAATCTCTCTAAGAACGTGTACTCCACGCCTGCGGATTTCGCTTCTGATGTGAGGTTAACATTCAACAATGCACTGACTTATAACCCCAAGGGTCATGATGTATACGCCATGGCGGAGCAGCTTCTGGCAAGGTTCGAGGAGCTGTATCGGCCGATGCGCGACAAATCTGAAGGTTGGATTAGACAAGATCAAGATTACGACGAGGAATTGCAGGCTAGTTCTTGGAGCCACGTTGAGCCGGAAAGGGTGAAAAAGAAGGAGAATCCTATTCCTCCTCCGAAATTGCAACAAGAGCCTCCCCAACCCCCTGCAAGTTCATCAAACCCTCCATTGGTGCAGTCTCCTGTGCGCACGCCATCTCCAATGCGAGCCCCTCCTGTGAAGCCTTTGAAACAACCGAAGCCGAAGGCTAAGGATCCCAACAAGAGAGAGATGAGTCTGGAGGAGAAACACAAATTGGGGTTAGGGTTGCAGAGTTTGCCAGCGGAGAAAATGGAACAGGTGGTGCAGATCATAAGGAGGAGGAACGGGCATTTGAAGCAGGATGGGGATGAGATCGAGCTAGATATTGAGGCTGTTGACACAGAGACCCTCTGGGAACTTGATCGGTTAGTGACTAATTATAAGAAGATGGTTAGCAAGATTAAGAGGCAGGCATTGATGGGAAATATTAACAACAACAATGAGCAGTCTAGCAGAGGGAATGGGGAATTGGCTGCTAGCGAGAAGGTTGATGGGGGTGCAGTTGAGGTGAAGAAGCCGAAGAAAGTAGAAGCTGGGGATGAGGATATTGACATTGGAGACGAGATGCCAATGAGTATGTTTCCCCCTGTGGAGATTGAGAAAGATAAAGATGTTGCTGGAGGGCATGCAAGTAGTAGTTCTAGTAGCTCTGGCAGTTCAAGCAGTGATTCGTCATCGTCAAGTGATTCGGATTCAGGGAGTTCCTCGGGGAGCGATTCTGAAGCAGACAATGGGCATTTGTAG 1593 0.4852 MASAVLANRNEPNWPQHRGGGAGFMGKVPFSNPNPNSNPKLANSKRTQSASDDASSINRRSNDAGVSHSQYVCFSISTCTKKELNDIKNRLVSELEQVRKCRNRIESGELQPGQSSNGHPKKPSSKKVSGNKRPLPLNSVKELKRSHSEVGNSMKVCSQILQKLMKHKHGWIFNVPVDVVGMGLHDYYDIIKQPMDLGTVKSNLSKNVYSTPADFASDVRLTFNNALTYNPKGHDVYAMAEQLLARFEELYRPMRDKSEGWIRQDQDYDEELQASSWSHVEPERVKKKENPIPPPKLQQEPPQPPASSSNPPLVQSPVRTPSPMRAPPVKPLKQPKPKAKDPNKREMSLEEKHKLGLGLQSLPAEKMEQVVQIIRRRNGHLKQDGDEIELDIEAVDTETLWELDRLVTNYKKMVSKIKRQALMGNINNNNEQSSRGNGELAASEKVDGGAVEVKKPKKVEAGDEDIDIGDEMPMSMFPPVEIEKDKDVAGGHASSSSSSSGSSSSDSSSSSDSDSGSSSGSDSEADNGHL 530
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02976 530 ProSiteProfiles NET domain profile. 337 418 IPR027353 -
Viun6g02976 530 Gene3D - 116 269 IPR036427 GO:0005515
Viun6g02976 530 MobiDBLite consensus disorder prediction 273 348 - -
Viun6g02976 530 Coils Coil 84 104 - -
Viun6g02976 530 Pfam Bromodomain 157 241 IPR001487 GO:0005515
Viun6g02976 530 MobiDBLite consensus disorder prediction 448 464 - -
Viun6g02976 530 PRINTS Bromodomain signature 168 181 IPR001487 GO:0005515
Viun6g02976 530 PRINTS Bromodomain signature 184 200 IPR001487 GO:0005515
Viun6g02976 530 PRINTS Bromodomain signature 218 237 IPR001487 GO:0005515
Viun6g02976 530 PRINTS Bromodomain signature 200 218 IPR001487 GO:0005515
Viun6g02976 530 MobiDBLite consensus disorder prediction 294 333 - -
Viun6g02976 530 CDD Bromo_plant1 154 251 IPR037377 -
Viun6g02976 530 SMART bromo_6 146 256 IPR001487 GO:0005515
Viun6g02976 530 PANTHER OSJNBA0053K19.4 PROTEIN 65 523 - -
Viun6g02976 530 MobiDBLite consensus disorder prediction 491 530 - -
Viun6g02976 530 ProSiteProfiles Bromodomain profile. 165 237 IPR001487 GO:0005515
Viun6g02976 530 MobiDBLite consensus disorder prediction 334 348 - -
Viun6g02976 530 MobiDBLite consensus disorder prediction 108 124 - -
Viun6g02976 530 Pfam Bromodomain extra-terminal - transcription regulation 346 408 IPR027353 -
Viun6g02976 530 MobiDBLite consensus disorder prediction 427 530 - -
Viun6g02976 530 Gene3D - 340 417 IPR038336 -
Viun6g02976 530 MobiDBLite consensus disorder prediction 105 139 - -
Viun6g02976 530 MobiDBLite consensus disorder prediction 30 62 - -
Viun6g02976 530 MobiDBLite consensus disorder prediction 273 293 - -
Viun6g02976 530 MobiDBLite consensus disorder prediction 1 62 - -
Viun6g02976 530 SUPERFAMILY Bromodomain 148 258 IPR036427 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02976 Viun-Chr6 32685131 32687615 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02976 - - gmx:100819363 796.193
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02976 6 32685131 32687615 Viun6g02976 6 32685131 32687615 ECH