Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02791 ATGATTCTTCGCAGAATCGCAGCCGCGAGCAGGTCATACTACACTAGCAGGACGAATAAACCGAGCCTGTACTCGAAAATCAGTCCCCTCGGAAATCCCAACACCAGTGTGGTTCCGGTGCTCGACGATTGGGTGTACAAGGGGAACAAGGTCCGAGTCGCAGAACTTCAACGCATCATTCGTGACCTTCGCAAACGCAGTAGGTTCTCCCAAGCTCTCCAGGTATCTGAGTGGATGTACATGAATGGTGCGTGCATATTCTCTCCAACGGAACATGCGGTGCATTTGGATTTGATTGGCAATGTTCAAGGATTCTCTGCTGCAGAAAGCTATTTTGATGCCTTGAGGGATATAGACAAAACCCATCAGACCTACGGTGCTCTCTTGAATTGCTACGCTCGCCAGCGTGAAATTGACAAGGCCCTCTCTCATTTTCAGAAAATGAAGGAGTTGGGGTTTGCTTCGTCTCCTCTAACTTACAATGTCATTATGTGTATGTATGCAAAGATTGGACAGCATGAGAAGGTTCCTGATGTTCTAAGTGAGATGAAAAAGAACCAAGTCATGCCTGACAACTTCAGCTACAGGATCAGTATAAATTCTTATGGTGTGAGGTCTGATTTTGGTGGAGTGGAAAGAGTGTTGAAAGAGATGGAGACTCAACCACACATTGTGATGGACTGGAACACTTACTCTATCGTGGCCAATTTTTATATAAAAGCTGCGTTTAGACGTGAGGCAGTTTCTGCCCTAAAGAAATCTGAGGAGAGGCTAGGTAACAAAGATGGCGAGGGTTACAATCATCTTATCTCTATGTATGCTCGACTTGAACTCAAGAATGAGGTTATGAGAATATGGGATCTGGAGAAAAGTGCTTGCAAGAGGTGCATAAACAGAGATTTCACAACCATGTTAGAATCTCTGGTAAAGCTTGGGGAGCTTGATGAAGCTGAGAAAATACTTACGGAATGGGAATCCTCCGGCAATTGTTATGATTTTGGAATCCCTAGTATTGTAATCATTGGGTATGCACAAAAAGGTTTGCATGAGAAAGCCGAGGCCATCCTCCTAGAGTTACAAAATAAGGAAAAGTTCACAAGCCCAAACTGTTGGTCGATGGTGGCAGGTGGATATCTTCATAAAGGTGACACGGAGAAGGCATTGAGATGTTTTAAAACTGCCCTCTCTATGTACGTGGAAAATAAAGGATGGAAGCCGAATGCAAAGGTGGTTGCAGAATTGTTGCGTTGGATTGCTGATAACGGCAGTATTGAAGATGCAGAAGATTTCATCAGATTGTTAAGAGAGGCCGTCCCAGTGAATAGACAAGTATATCATACCCTAATCAAGACTTATGTGCGAGATGGTAAAGAAGTGGATGAGCTTCTGGACAACATGGAGAAAGACGGCATCGTTGAAAACGAAGAAACTAAGAAAATAATTAACATCAGGAGTGCATGA 1461 0.4374 MILRRIAAASRSYYTSRTNKPSLYSKISPLGNPNTSVVPVLDDWVYKGNKVRVAELQRIIRDLRKRSRFSQALQVSEWMYMNGACIFSPTEHAVHLDLIGNVQGFSAAESYFDALRDIDKTHQTYGALLNCYARQREIDKALSHFQKMKELGFASSPLTYNVIMCMYAKIGQHEKVPDVLSEMKKNQVMPDNFSYRISINSYGVRSDFGGVERVLKEMETQPHIVMDWNTYSIVANFYIKAAFRREAVSALKKSEERLGNKDGEGYNHLISMYARLELKNEVMRIWDLEKSACKRCINRDFTTMLESLVKLGELDEAEKILTEWESSGNCYDFGIPSIVIIGYAQKGLHEKAEAILLELQNKEKFTSPNCWSMVAGGYLHKGDTEKALRCFKTALSMYVENKGWKPNAKVVAELLRWIADNGSIEDAEDFIRLLREAVPVNRQVYHTLIKTYVRDGKEVDELLDNMEKDGIVENEETKKIINIRSA 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02791 486 ProSiteProfiles TPR repeat profile. 368 401 IPR019734 GO:0005515
Viun6g02791 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 121 155 IPR002885 -
Viun6g02791 486 Pfam PPR repeat family 159 202 IPR002885 -
Viun6g02791 486 NCBIfam pentatricopeptide repeat 301 330 IPR002885 -
Viun6g02791 486 NCBIfam pentatricopeptide repeat 124 153 IPR002885 -
Viun6g02791 486 NCBIfam pentatricopeptide repeat 159 191 IPR002885 -
Viun6g02791 486 SUPERFAMILY TPR-like 306 402 IPR011990 GO:0005515
Viun6g02791 486 Pfam PPR repeat 371 392 IPR002885 -
Viun6g02791 486 Pfam PPR repeat 124 153 IPR002885 -
Viun6g02791 486 Pfam PPR repeat 301 328 IPR002885 -
Viun6g02791 486 Pfam PPR repeat 338 361 IPR002885 -
Viun6g02791 486 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 156 190 IPR002885 -
Viun6g02791 486 Gene3D Tetratricopeptide repeat domain 204 290 IPR011990 GO:0005515
Viun6g02791 486 Gene3D Tetratricopeptide repeat domain 291 397 IPR011990 GO:0005515
Viun6g02791 486 Gene3D Tetratricopeptide repeat domain 31 203 IPR011990 GO:0005515
Viun6g02791 486 Gene3D Tetratricopeptide repeat domain 398 482 IPR011990 GO:0005515
Viun6g02791 486 PANTHER OS12G0527900 PROTEIN 18 469 - -
Viun6g02791 486 SUPERFAMILY TPR-like 114 454 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02791 Viun-Chr6 31701848 31704791 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02791 22 469 EF-hand Containing Proteins AT1G02150 30.197 7.72e-71 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02791 - - gmx:100805658 826.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02791 6 31701848 31704791 Viun6g02791 6 31701848 31704791 ECH