Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02782 ATGGATGCTCACGTTACTGATTTGGAGTGGGAAACTTCCAGTGACAGCAGCAGCAGCAGTGAGGATCAAGAGGATACTGATTTTCAATATGGTGGACAAGCCCGGAGCATATTATCGAGTTTAGAGGAAAGCATCGGAAAGATTGATGACTTTCTCTCATTTGAGAGAACATTTGTCCATGGGGATGTGGTCTGTGCCTCCTCAGACCCATCCGGACAGATGGGGAGGGTCACAAGTGTTGATATGTCAGTGGACTTGGAAAGTGTTCAAGGAAAGAAATTGAAAAATGTGAACTCCAAGAAACTTATGAAGATTCGCTCCATTTCAGAAGGTGATTATGTAATTAAGGGGCCATGGATTGGTCAGGTTCAAAGGGTAGTAGACAGAGTGACTATATTGTTTGACAATGGAACTACATGTGAGGTCATTACCTTGGAAAAAGATCAGATTTTACCACTGACTCATAATCTTCTTGAAGATTCACAGTATCCGTACTATCCAGGGCTGAGAGTAAAGGTTAAGACCTCCACAGCTTCTAAACCAGCTAGATGGCTATGTGGCACCTGGAAAGGCAATCATGGTGAAGGAACTGTTTGTGCTGTGGAAGCAGGTTTGGTGTACGTTAATTGGCTTGCCTCTGTTCTCTTCGGTTCCAATTTGAATGTAAATGTTCCTCTATGCTGGCAAGATTCAAAAAACATGACCTTGTTGTCCTGTTTTTCACACACAAACTGGCAACTTGGTGATTGGTGCATGCTTCCACATGTGGACCAGAAGGAACAGATGATTCAAGATGCATCTCCATGTGATCCTCAAAACGAGCATAGTAAGGATAGAGGATGTAAGACGAGTAACATTGGGGAATTATTTATAATTGAGAAGATAAAGACAGAAGTTGATGTTATTTGGCAAAATGGTGAACATACTTTGGGATTGGATCCGCTTAACTTAATCCCAGCGAATGTCATAAACAGTCATGAATTTTGGCCCCAGCAGTTTGTGCTGGAAAAAGGTGCTTCTGATGATCCTCTCAAACCTAGCAATCAAAGATGGGGTGTTGTTCTTTCCATGGATGCAAAAGAGCATACTGTAAAGGTTCAATGGAGAACTTCTCCCACATCCGGGACTGATAATTTCACTGGAGATGCAATGATGGAAACTGTGAGTGCCTACGAACTACTCGAGCATCCAGATTATTCTTGTTGTTTTGGCGATATTGTGTTCAAGGCGGCTCAAAAACAGCTTGGTGACCAAGCTGACAAAAATAATGTGAACTCGGCGACTGATGTAATTGTAGAGGCTCCTCTGATAAACCGGGACCAAATCAGTTATCAGAATGAATCTGTAGATAGCAGTTACCTCTCCTGCATTGGCAATGTTACTGGTTTCATAGATGGTGATGTGGAGGTCAAATGGGCTACTGGTTTAACAACAAAGGTTGCACCTTATGAAATTTTCCGAATTGATAAGCACGAAGGTTCAACTGCAACCCCTGTTCCTTATGAAGCAAATGTTGAGCCGTTCTCCCAAGAGATGATTGATCATAGAAGTCTTCAATCAGACCAGAAGGGAAAGACCTTGTTAGATTGTAATGGCGATAGAGACAATTGTGAAAAGCATCCAGGAGAGAGCAGTTCCTCATCCCTTCCTCAAGCTGCCTTTGAACTTTTCTCCAGCATTAAGGCCAGCATACTCAAAACACTTTCTGTGGCATCACTTTCTGGAAAATTCTCCCCAATCCCTAGGTTTGAAGAGGGAAATGAATCTATCTGTCTTGATAAAAAAGATTTAGACACTTGTGACCCTGACACTGAATCATATTTGGCGAGGAAGCTGCAGTCTTCTTCTGATGAAGTTGTTGGGATTCATGAGAGGAAACAATTTCCAGTTTCTTTAGACAACGAAAGTTCAGATCAGTTGAAGCAGTTTGATGTAATTGATAATTGCTCAGACCACCACTTTTTTTATGAAGGGAAAGGGTTTTCGTTATCTCAGGTAAAAAAGGATTGGGTGAAGAAGGTACAACAAGAATGGAGCATCCTGGAAAAAAGTCTCCCTGAAACTATTTATGTCCGTGTCTTTGAAGAAAGAATGGATCTCATGCGAGCAGCCATTGTGGGTGTGTCTGGGACACCTTATCATGATGGATTGTTTTTCTTTGATATACATTTCCCTTCACAGTTTCCCAGCCAACCCCCGATGGTGCATTACATTTCTGGTGGACTACGATTGAATCCTAATTTGTATGAATCGGGTAAAGTCTGTTTGAGTCTCCTAAATACGTGGACCGGTACAGCTGCCGAAGTTTGGAACCCTGGAACTTCAACAATTCTTCAAGTCCTTCTTTCCCTGCAGGCCCTTGTCCTTAATGAGAAGCCTTATTTCAATGAGGCTGGATATGATGAACAAATTGGTAGAGCTGAAGGGGAGAGAAACTCAGTTAGTTACAATGAGAATGCTTTCCTTGTCACCTGCAAATCCATTTTGTATCTATTAAGAAAGCCTCCCAAGCATTTTGAGGCTTTGGTGGAGGAGCACTTTAGACAACGTTCCAAACATATACTTCTGGCTTGTAAGGCATATCTTGAAGGAGCTCCTATTGGATGTGCTTTTGGTGGTGGAAATACTGAGAATGAAAACCAAAAGGGAACTTCTACTGGATTTAAGATCATGCTTGCTAAGCTTTTCCCCAAGCTTGTGGAGGCATTTTCTGACAAGGGAATTGATTGCAGCCAGTTCGCTGAGATGCAAAAGTAA 2757 0.4207 MDAHVTDLEWETSSDSSSSSEDQEDTDFQYGGQARSILSSLEESIGKIDDFLSFERTFVHGDVVCASSDPSGQMGRVTSVDMSVDLESVQGKKLKNVNSKKLMKIRSISEGDYVIKGPWIGQVQRVVDRVTILFDNGTTCEVITLEKDQILPLTHNLLEDSQYPYYPGLRVKVKTSTASKPARWLCGTWKGNHGEGTVCAVEAGLVYVNWLASVLFGSNLNVNVPLCWQDSKNMTLLSCFSHTNWQLGDWCMLPHVDQKEQMIQDASPCDPQNEHSKDRGCKTSNIGELFIIEKIKTEVDVIWQNGEHTLGLDPLNLIPANVINSHEFWPQQFVLEKGASDDPLKPSNQRWGVVLSMDAKEHTVKVQWRTSPTSGTDNFTGDAMMETVSAYELLEHPDYSCCFGDIVFKAAQKQLGDQADKNNVNSATDVIVEAPLINRDQISYQNESVDSSYLSCIGNVTGFIDGDVEVKWATGLTTKVAPYEIFRIDKHEGSTATPVPYEANVEPFSQEMIDHRSLQSDQKGKTLLDCNGDRDNCEKHPGESSSSSLPQAAFELFSSIKASILKTLSVASLSGKFSPIPRFEEGNESICLDKKDLDTCDPDTESYLARKLQSSSDEVVGIHERKQFPVSLDNESSDQLKQFDVIDNCSDHHFFYEGKGFSLSQVKKDWVKKVQQEWSILEKSLPETIYVRVFEERMDLMRAAIVGVSGTPYHDGLFFFDIHFPSQFPSQPPMVHYISGGLRLNPNLYESGKVCLSLLNTWTGTAAEVWNPGTSTILQVLLSLQALVLNEKPYFNEAGYDEQIGRAEGERNSVSYNENAFLVTCKSILYLLRKPPKHFEALVEEHFRQRSKHILLACKAYLEGAPIGCAFGGGNTENENQKGTSTGFKIMLAKLFPKLVEAFSDKGIDCSQFAEMQK 918
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02782 918 SUPERFAMILY UBC-like 662 838 IPR016135 -
Viun6g02782 918 MobiDBLite consensus disorder prediction 10 28 - -
Viun6g02782 918 CDD UBCc 671 824 IPR000608 -
Viun6g02782 918 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 669 829 IPR000608 -
Viun6g02782 918 FunFam Probable ubiquitin-conjugating enzyme E2 23 631 907 - -
Viun6g02782 918 Pfam Ubiquitin-conjugating enzyme 674 820 IPR000608 -
Viun6g02782 918 MobiDBLite consensus disorder prediction 1 28 - -
Viun6g02782 918 PANTHER (E3-INDEPENDENT) E2 UBIQUITIN-CONJUGATING ENZYME 2 910 - -
Viun6g02782 918 Gene3D Ubiquitin Conjugating Enzyme 632 910 IPR016135 -
Viun6g02782 918 SMART ubc_7 672 829 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02782 Viun-Chr6 31646722 31653444 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02782 22 912 Miscellaneous Gene Families AT2G33770 48.066 0.0 854
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02782 K10581 - gmx:100805463 1545.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02782 6 31646722 31653444 Viun6g02782 6 31646722 31653444 ECH