Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g02597 ATGGAGGGCAAAATCTTGGATCATCAGAATCAGGTGCAAGCACAAGCTGTAGAAAATTTATCACAAGGGCTTTCTAGTTTCTCCGTTAGGGACCAGATATCCAATTCCGATTCTCCTCAGGATGATGAGGTTGGTGGTAGGAGGAGGAATTGCGATACTAGAGAGTATTTTGATTCTTTTTCCTCTGATAGTACTAGTACTGGACGGTACTCTATAAATTCTACTAGATTGTATCCTGAATTCCCCGAAAAACAATTGGAAAACCATAACAAAGAGATGGAGTCTTCAGCTAATCTTCAGAAACAGGGAAGGTACTTCTATTACGATACTCCACTGCAGGAAGATACTGGAGTGTGGATACCAGTTTCAGTTCCACCTATGTTAGAAGATGATCATAAAGAGTGGGCCAAAGGTTTTCACTCAAACGGTGGCTATTTTCCTGATGAGGACTTGGGGTGGAATCAATATGTAGGAGATGAAAGGGAATTGACTATGTGGGATGTGCTAACAGAAATGTTACTTGTGGCTCGGGGAAAAGTGACTTCTTTGGCATCAGGAGATATTAATATGTGTAATTTTTCGTGGATATCCAGCCGCGTACTACTTGAACAAGCTTGGAGAGAGATGGCACAAACTCTCACAGAGGCCAATTTTGGTAATGTGAAGGAACTATTAGAAGCTGAGCCACCAAAATGGTTAGCTGATAGTGCTGCTGCTTCTTGTATGCTTTGTGGTGTGAGGTTTCACCCCATCTTGTGCTCTCGACATCACTGCCGGTTTTGTGGAGGAATTTTTTGTGGTGAGTGCTCTAAAGGGCGGAGCTTGTTGCCATCAAAATTCAGAGTCTCTGACCCCCAAAGAGTATGTGATGTATGCTGTGTCAGACTCGAGTCTGTACAGCCTTATTTGATGGATCATGTAAGCAATGCTGCTCAGTTGCCAACCCATGACCTGACAGATCTGAGCACTTTGAGATCTTGGGTTAATTTTCCTTGGGGGCAGTCCATGGAATATGAAATTTACAAGGCAACTAACACTATCAAGGCATATAATCAGATTGGTTTTCTAAAGCCCGAGAAGTCAATTCCAGATGTCATTCTAAGAAAAGCAAAAGGCCTTGCAATTATCACTGTGGTTAGAGTAGGAGTGGTGGTTACGTATAACATTGGAACAGGACTTGTGGTCGCAAGAAGGGAAGATGGTTCATGGTCTGCTCCATCTGCTGTGTCCACCTTTGGTGTAGGGTGGGGGGCTCAGGTCGGAGGAGAGTTGACAGACTTCATTATTGTCTTGAGAACAAATGATGCTGTCAAGACATTCAGTGGCAATATGCATGTTTCACTTGGAGCTGGTTTGAGTGCTGCAGTAGGCATTGTTGGTAGATCAGTTGAAGCTGATGTTCGAGCTGGTGATGGTGGTTATGCTGCTTGTTATACCTACAGCTGCAGTAAAGGTGCATTTGTTGGATGTTCACTTGAAGGGAGTATGGTGACTACTCGCACGCAAGAAAATTCCCGTTTCTATGGCAGCCAGTCTATAGCTGCAACAGAGATACTTGGCTCGTTGCCTAGGCCACCTGCTGCTGCCATTCTCTACCGTGCACTTGCTGATCTCTATTCCAAGGTTGATGGATGA 1635 0.4416 MEGKILDHQNQVQAQAVENLSQGLSSFSVRDQISNSDSPQDDEVGGRRRNCDTREYFDSFSSDSTSTGRYSINSTRLYPEFPEKQLENHNKEMESSANLQKQGRYFYYDTPLQEDTGVWIPVSVPPMLEDDHKEWAKGFHSNGGYFPDEDLGWNQYVGDERELTMWDVLTEMLLVARGKVTSLASGDINMCNFSWISSRVLLEQAWREMAQTLTEANFGNVKELLEAEPPKWLADSAAASCMLCGVRFHPILCSRHHCRFCGGIFCGECSKGRSLLPSKFRVSDPQRVCDVCCVRLESVQPYLMDHVSNAAQLPTHDLTDLSTLRSWVNFPWGQSMEYEIYKATNTIKAYNQIGFLKPEKSIPDVILRKAKGLAIITVVRVGVVVTYNIGTGLVVARREDGSWSAPSAVSTFGVGWGAQVGGELTDFIIVLRTNDAVKTFSGNMHVSLGAGLSAAVGIVGRSVEADVRAGDGGYAACYTYSCSKGAFVGCSLEGSMVTTRTQENSRFYGSQSIAATEILGSLPRPPAAAILYRALADLYSKVDG 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g02597 544 MobiDBLite consensus disorder prediction 41 56 - -
Viun6g02597 544 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 235 297 IPR017455 -
Viun6g02597 544 MobiDBLite consensus disorder prediction 57 71 - -
Viun6g02597 544 MobiDBLite consensus disorder prediction 28 71 - -
Viun6g02597 544 SUPERFAMILY FYVE/PHD zinc finger 230 309 IPR011011 -
Viun6g02597 544 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 221 307 IPR013083 -
Viun6g02597 544 PANTHER SH3YL1 PROTEIN 195 543 - -
Viun6g02597 544 FunFam Zinc finger family protein 221 303 - -
Viun6g02597 544 Pfam Las17-binding protein actin regulator 413 536 IPR007461 -
Viun6g02597 544 Pfam FYVE zinc finger 231 296 IPR000306 GO:0046872
Viun6g02597 544 SMART fyve_4 227 298 IPR000306 GO:0046872
Viun6g02597 544 CDD SYLF_FYVE 338 538 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g02597 Viun-Chr6 30530295 30534190 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g02597 232 315 EF-hand Containing Proteins AT3G14270 34.831 8.74e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g02597 K20523 - gmx:100813648 956.822
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g02597 6 30530295 30534190 Viun6g02597 6 30530295 30534190 ECH