Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01896 ATGGTGAAGGTGCGAATGAACACCGCCGATGTAGCCGCCGAGGTCAAATGCCTCCGGCGCTTCATTGGAATGCGGTGCTCCAACGTCTACGATCTTTCTCCCAAGACCTACGTTTTTAAGCTGATGAACAGCAGTGGAGTTTCGGAATCTGGGGAGAGCGAAAAGGTTCTACTTCTCATGGAGAGTGGCGTTAGATTGCACTCTACTATCTACATGCGTGACAAGAGCAACACGCCTTCTGGTTTCACTCTCAAATTGAGGAAGCATATTCGTACGAGGAGGCTCGAGGATGTGCGCCAACTTGGGTACGATCGGATTATTCTCTTCCAATTTGGACTTGGGGAGAATGCGAACTATGTTATATTGGAACTGTATGCTCAGGGAAACATCCTCCTCACAGATTCTAATTTTACCGTCATGACTCTGCTGCGGTCTCACAGGGATGATGATAAAGGGCTTGCTATTATGTCACGTCATCGTTATCCTGTTGAAAGTTGTAGAGTTTTTGAGCGAACTACTATTGAAAAGTTGTGGGCATCTCTGGTATCTTCCAAGGAAGATGATAACGATGAGAATGTTAAGGTCAATGGAAATGGAAATAATGTTTCTAGTGTAGCAAAAGAGAAGCAGGGAACCCAAAAAGGTGGGAAGCTGTCAACGCTGAAAATTGTCCTTGGTGAGGCACTTGGTTATGGACCTGCACTTTCTGAACATATAATATTAGATGCTGGCCTAATCCCTAGTACAAAAGTTCCCAAAGATAAGACGTGGGATAATGCTACTATTCAGGCTTTGGTCCAAGCTGTTGTGAAGTTTGAAGATTGGATGCAGGATGTTATTTCAGGTGAAGTAGTCCCTGAAGGATACATTGTGATGCAGAACAAAAATTTGGGGAACAATTCTTCAATATCTCAGCCTGGAAGTGTTAGCCAGATGTATGATGAGTTCTGCCCCATCTTACTCAACCAGTTTAAGTCAAGGGATTATACAAAATTTGAGACATTTGATGCAGCCTTAGATGAGTTCTACAGCAAAATTGAGAGTCAAAGAGCTGAACAGCAGCAGAAAGCCAAAGAAAACACAGCTGCGCAGAAACTTAATAAGATTCGCCAGGATCAGGAAAATCGAGTACATGCTTTGAGGAAAGAAGCTGATCAATGCGTTAAGATGGCAGAGTTGATAGAATATAACTTGGAAGATGTGGATGCTGCTATATTAGCTGTTCGAGTAGCTCTAGCAAAAGGTATGAACTGGGATGACCTTGCTCGGATGGTGAAGGAAGAAAAGAAAGCTGGAAATCCAGTAGCTGGCCTCATCGACAAGCTCCATCTTGAGAGGAACTGCATGACTTTATTGTTAAGCAACAATCTTGATGAGATGGATGATGATGAGAAGACACTCCCTGTGGATAAGGTTGAAGTTGATTTAGCTCTTTCAGCACATGCCAATGCTCGGAGGTGGTATGAACAGAAGAAAAAGCAGGAGAGCAAACAGGAAAAAACTGTAACTGCCCATGAAAAGGCTTTTAAAGCTGCAGAAAGAAAGACTCGCCTACAGCTTAATCAGGAAAAAACTGTTGCCTCAATTTCACATATGCGCAAAGTCCACTGGTTTGAGAAATTTAATTGGTTCATTACCAGTGAGAACTATTTGGTTATCAGTGGACGTGATGCACAGCAAAATGAGCTGATAGTGAAGCGGTATATGTCAAAAGGAGACCTGTATGTACATGCCGATCTGCATGGAGCTTCTAGTACTGTTATCAAGAATCACAAACCTATTCAACCAGTTCCACCACTGACCCTAAACCAAGCTGGATGTTTCACAGTCTGCCATAGCCAGGCATGGGATTCAAAAATTGTTACTAGTGCCTGGTGGGTTTATCCTCATCAGGTTAGTAAAACAGCTCCTACAGGTGAATATCTCACAGTAGGGAGTTTCATGATCCGGGGAAAGAAAAATTTTCTTCCACCACACCCTCTTATCATGGGTTTTGGCCTACTATTTCGCCTGGATGAGAGTTCATTAGGATCACATTTAAATGAACGAAGAGTGAGAGGAGAGGAGGAAGCAACAGATGATTTTGAAAATGCTAATCTGGAAGACAAATCTGATTCAGAATCTGAGAACGATGATATAAAATCTGTCATTGACTCCGAAATGAATGGTAAATTATCTGCAGATTCACACAAGCCCCTATCAGAAGACTTTTCCAAAGATTCATCTCAGACTGGTTTAGCTACTATCAGTTCCAAAAAGGAAATTTCACGGGATTTTCCTGTGAAAGAGACAAGTACATCAAATATGGTTAATAGGGAGATATCATCAGACATTAGCAGAGATGGCTTAGTTGCTGTCCCCCCTCAACTTGAGGAACTTATTGACCAAGCTCTGGAACTTGGATCTGTTGCTAAACCAAGTAAGCTTTATGGAACTGAGAACTCTCAGATTGATTTAGGCGGTGACAAACATTTGGAACAAAGCAAAGCAGCAATTAGGGATAAACCTTACATTTCAAAAGCTGAGAGACGAAAGCTTAAAAAAGAACAGAAACATGAAGATACAGATTCAAATGTTGAACATGGTAAGGATGAACCGAAACTGAAAGATATTTCTGCAAATCTACCTGCAAAGGAAGAGCAAAATGTGAAAAAAGGTGGTGGTCAAAAAATCAGCCGTGGGCAGAAGGGTAAACTGAAAAAGATAAAGGAGAAATATGCTGGACAGGATGAGGACGAACGGAACATCCGAATGGCATTGTTGGCTTCTTCTGGAAAATCAATCAAGAAGGAAGACACGTCGTCTGAAAATGCTGCATTAGACAAAGGGAAAAAATCTGGCAACGCAGGTCCTATTGATGCACCAAAAATATGTTACAAGTGTAAGAAGCCAGGTCACTTGTCTCGGGATTGTAAGGAAAAATCAGATGATGTGGTGCATAGGAATGCAATTGGTGAAGCTGAAGAAAATCCCAAAATGACTGATATTGAAACTTCCCAAGCAGACAGGGTGACAATGGAAGAAGATGATATTCATGAAATAGGAGAAGAAGAAAAAGAAAAATTAAATGACGTGGATTACTTGACTGGGAATCCACTTCCTAATGACATTCTCCTGTATGCTGTTCCTGTTTGTGCTCCTTACAGTGCACTTCAGTCTTACAAATATCGGGTGAAGATAATTCCTGGACCAGCGAAGAAAGGGAAAGCTGCAAAAACTGCAATGAACTTGTTCAGCCACATGTCAGAAGCAACTACCCGGGAGAAGGAGTTGATGAAGGCCTGTACAGATCCTGAGCTAGTTGCTGCAATTATTGGTAATGTGAAAATATCAGCAGCCGGCCTTGCTCAATTGAAGCAAAAGCAAAAGAAAGGCAAGAAGAGCAGCAAACAAGCTAGTTAG 3402 0.4189 MVKVRMNTADVAAEVKCLRRFIGMRCSNVYDLSPKTYVFKLMNSSGVSESGESEKVLLLMESGVRLHSTIYMRDKSNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGENANYVILELYAQGNILLTDSNFTVMTLLRSHRDDDKGLAIMSRHRYPVESCRVFERTTIEKLWASLVSSKEDDNDENVKVNGNGNNVSSVAKEKQGTQKGGKLSTLKIVLGEALGYGPALSEHIILDAGLIPSTKVPKDKTWDNATIQALVQAVVKFEDWMQDVISGEVVPEGYIVMQNKNLGNNSSISQPGSVSQMYDEFCPILLNQFKSRDYTKFETFDAALDEFYSKIESQRAEQQQKAKENTAAQKLNKIRQDQENRVHALRKEADQCVKMAELIEYNLEDVDAAILAVRVALAKGMNWDDLARMVKEEKKAGNPVAGLIDKLHLERNCMTLLLSNNLDEMDDDEKTLPVDKVEVDLALSAHANARRWYEQKKKQESKQEKTVTAHEKAFKAAERKTRLQLNQEKTVASISHMRKVHWFEKFNWFITSENYLVISGRDAQQNELIVKRYMSKGDLYVHADLHGASSTVIKNHKPIQPVPPLTLNQAGCFTVCHSQAWDSKIVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLGSHLNERRVRGEEEATDDFENANLEDKSDSESENDDIKSVIDSEMNGKLSADSHKPLSEDFSKDSSQTGLATISSKKEISRDFPVKETSTSNMVNREISSDISRDGLVAVPPQLEELIDQALELGSVAKPSKLYGTENSQIDLGGDKHLEQSKAAIRDKPYISKAERRKLKKEQKHEDTDSNVEHGKDEPKLKDISANLPAKEEQNVKKGGGQKISRGQKGKLKKIKEKYAGQDEDERNIRMALLASSGKSIKKEDTSSENAALDKGKKSGNAGPIDAPKICYKCKKPGHLSRDCKEKSDDVVHRNAIGEAEENPKMTDIETSQADRVTMEEDDIHEIGEEEKEKLNDVDYLTGNPLPNDILLYAVPVCAPYSALQSYKYRVKIIPGPAKKGKAAKTAMNLFSHMSEATTREKELMKACTDPELVAAIIGNVKISAAGLAQLKQKQKKGKKSSKQAS 1133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01896 1133 MobiDBLite consensus disorder prediction 924 949 - -
Viun6g01896 1133 ProSiteProfiles Zinc finger CCHC-type profile. 958 973 IPR001878 GO:0003676|GO:0008270
Viun6g01896 1133 Gene3D ibrinogen binding protein from staphylococcus aureus domain 6 163 - -
Viun6g01896 1133 Coils Coil 363 383 - -
Viun6g01896 1133 Pfam NFACT protein RNA binding domain 540 651 IPR008532 -
Viun6g01896 1133 MobiDBLite consensus disorder prediction 194 211 - -
Viun6g01896 1133 MobiDBLite consensus disorder prediction 982 1006 - -
Viun6g01896 1133 SUPERFAMILY Retrovirus zinc finger-like domains 954 976 IPR036875 GO:0003676|GO:0008270
Viun6g01896 1133 MobiDBLite consensus disorder prediction 813 910 - -
Viun6g01896 1133 MobiDBLite consensus disorder prediction 680 712 - -
Viun6g01896 1133 Pfam Zinc knuckle 957 973 IPR001878 GO:0003676|GO:0008270
Viun6g01896 1133 Pfam NFACT protein C-terminal domain 1018 1111 IPR021846 -
Viun6g01896 1133 MobiDBLite consensus disorder prediction 724 751 - -
Viun6g01896 1133 MobiDBLite consensus disorder prediction 189 211 - -
Viun6g01896 1133 PANTHER NUCLEAR EXPORT MEDIATOR FACTOR NEMF 1 1109 - -
Viun6g01896 1133 FunFam nuclear export mediator factor Nemf 6 163 - -
Viun6g01896 1133 MobiDBLite consensus disorder prediction 819 874 - -
Viun6g01896 1133 SMART c2hcfinal6 957 973 IPR001878 GO:0003676|GO:0008270
Viun6g01896 1133 Pfam NFACT N-terminal and middle domains 10 161 - -
Viun6g01896 1133 Pfam NFACT N-terminal and middle domains 222 523 - -
Viun6g01896 1133 Gene3D - 953 1006 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01896 Viun-Chr6 25948276 25958258 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01896 K24971 - gmx:100807437 1883.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01896 6 25948276 25958258 Viun6g01896 6 25948276 25958258 ECH