Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01880 ATGGCTCGGAAGGGTAATCAGCAGAAGAATGGAGTGGACCGTCAAGGATTGAATCACAAAAAAGGGGTTTCTGGTAGTGTCCTTCCGGGAATGAAAGGCCATGGTAAAGGAGGGCCGGTGAAGGTTTTCCCAAGAGAGGACCTCGCTGACGGTGATACCGGTGTTGCGCGGACTGCATGCGATGCAAGTTCTTCTGGTGATGACTTTAACAACGAGCAAAAGTCTGACAATAATTCTCGGAAAGAGAAGCAAGGGATGGCTGGAAAGCCTGACCTGGAGGAGTCCTTGCCCTTTGAGAGAGATTCTGGGGATGACCGTTTGAATTCTGAAGCTTCAGTACAAGAAGAAAATGGGACTTTACCTAGAAGTGATCAAGGTCTTCAGAGTATAAATAGTAGATTGAGCAGTATACTGGATAGTTTGCACCTGAAAAGTGTGGTGGATAAATTAGACATTGCCGATAATGTGATGATTAGAAGATTAAGGTTTTCACTGTTTTCCATGTTCACAGCAATTTCAGAGTGGCTAACCAGGCAGACTCCATTGTTTGTATCTCTTAGAACCATCATGTTTAAAGCCTATCATGATTCCAGAACGAAAGTTGTGCAGGCATATCCTGTTATTCTGAAGTGGCTCATGCATTTTGGAAATGTAGTGCTCCTATTATCAGTATTTTGGTTGGATTGTGCACTTCGGGGTATTGATTCATTTGTACGAATGGGTACAACGTCCTTCTTCTCTGTTATATGGTGTAGCATATTTTCTGTGATTAGTATGATAGGGCTGCTCAAGTTTCTTGCTGTCGTGGGCCTGGCTGCTTTGATTGGATTTTTTCTTGGGCTTATGCTTGCAATTTTGGTTGTTGCAATCATTGGAGTTGTTATCTTGTGGTTTTACGGTAGCTTTTGGACAACGGTATTTTTCATCATCCTAGGAGGATTGGCATTTATGTTTAGTCATGAACGGGTGGCACTACTTATCACCACAGTGTACTCTGTCTATTGTGCATGGCTGTATGTTGGATGGCTTGGTTTGCTGGTGGCTTTTAATTTAGCTTTTATCTCTAGTGATGTTCTGATATACTTCCTCAAGAAAAACATAGATCAACAGAGTAGATCCAATCCTTTTGAACAAAGAACTGGAATGTATGGTCAACCTGGATTCAGTGACGGATCAACACATGCTTCTTCCTCTGAAAATGGACCGGGACCATCGGCAGATCGCAGTGCTGGGATCCCTTCAACTAGTGGGGTTGATTCTGATGTAACTTCTGAAGATGAAGTAGTCCGTTTGTTGAACTGCTCTGATCACTATGCCGCACTGGGCTTGACGCGGTATGAAAATATCGATGTTTCAATACTAAAGCGGGAATATAGGAAAAAGGCAATGTTGGTACATCCTGACAAAAATATGGGTAATGAAAAGGCTGCTGAAGCATTTAAGAAACTTCAAAATGCTTATGAGATTCTAATGGATTCCTTGAAGCGAAAAGCTTATGATGATGAACTAAGGAGAGAGGAGCTATTGAGTGTATTTCGTAGATTTCATGATGCTTCTAATAAGAATGGTAGGCATGGATTATTTCCTTCAGGATTTGCACGGTCTGATGCCGATGGCAAGGACCCATTTGGTGATTCAAGGCGAATAGCCTGTAAAAGGTGTGGTGGTTTTCATCTCTGGATACACACCAAGAAACAAAAGTCTCGGGCAAGATGGTGCCAGGATTGCCAAGATTTTCATCAAGCTAAGGATGGGGATGGATGGGTTGAACAATCTTCCCAACCATTTCTTTTTGGCTTATTGCAGAAGGTGGATGCTCCTTCAGCGTATGTGTGTGCTGGTAGCAGGATATACGACGCCACCGAATGGTATATCTGTCAGGGCATGAGATGTCCAGCGAACACTCATAAACCAAGTTTCCATGTTAACACCAGTTTAATGTCCAAGAATAATTCTGGCAAGGGAACTAGTTCAGGTCAAAGAGGTGGGCGGATGCCAACACCTAATATGGAAGAAACCATGACTGAGGAAGAATTCTTTGAATGGTTACAAAATGCAGTCCAGGCAGGTGTGTTTGACAATTTTAGTGGTACTGCAACAGAGACTCCATCACCCAAATCTGGAAATGGGATGAAAAGTCCTAGTAGTAGTGGTGGTGGTGCTAGTGCGAGTGGCAGTAGCAGCAGCAAGAGAAAGAAAAAGGGAAAAAAGCAATGGTGA 2220 0.4297 MARKGNQQKNGVDRQGLNHKKGVSGSVLPGMKGHGKGGPVKVFPREDLADGDTGVARTACDASSSGDDFNNEQKSDNNSRKEKQGMAGKPDLEESLPFERDSGDDRLNSEASVQEENGTLPRSDQGLQSINSRLSSILDSLHLKSVVDKLDIADNVMIRRLRFSLFSMFTAISEWLTRQTPLFVSLRTIMFKAYHDSRTKVVQAYPVILKWLMHFGNVVLLLSVFWLDCALRGIDSFVRMGTTSFFSVIWCSIFSVISMIGLLKFLAVVGLAALIGFFLGLMLAILVVAIIGVVILWFYGSFWTTVFFIILGGLAFMFSHERVALLITTVYSVYCAWLYVGWLGLLVAFNLAFISSDVLIYFLKKNIDQQSRSNPFEQRTGMYGQPGFSDGSTHASSSENGPGPSADRSAGIPSTSGVDSDVTSEDEVVRLLNCSDHYAALGLTRYENIDVSILKREYRKKAMLVHPDKNMGNEKAAEAFKKLQNAYEILMDSLKRKAYDDELRREELLSVFRRFHDASNKNGRHGLFPSGFARSDADGKDPFGDSRRIACKRCGGFHLWIHTKKQKSRARWCQDCQDFHQAKDGDGWVEQSSQPFLFGLLQKVDAPSAYVCAGSRIYDATEWYICQGMRCPANTHKPSFHVNTSLMSKNNSGKGTSSGQRGGRMPTPNMEETMTEEEFFEWLQNAVQAGVFDNFSGTATETPSPKSGNGMKSPSSSGGGASASGSSSSKRKKKGKKQW 739
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01880 739 CDD DnaJ 436 492 IPR001623 -
Viun6g01880 739 MobiDBLite consensus disorder prediction 389 421 - -
Viun6g01880 739 MobiDBLite consensus disorder prediction 694 728 - -
Viun6g01880 739 ProSiteProfiles dnaJ domain profile. 436 503 IPR001623 -
Viun6g01880 739 PANTHER OS03G0832900 PROTEIN 1 739 - -
Viun6g01880 739 MobiDBLite consensus disorder prediction 1 125 - -
Viun6g01880 739 MobiDBLite consensus disorder prediction 58 72 - -
Viun6g01880 739 Pfam DnaJ domain 436 500 IPR001623 -
Viun6g01880 739 MobiDBLite consensus disorder prediction 73 111 - -
Viun6g01880 739 MobiDBLite consensus disorder prediction 642 673 - -
Viun6g01880 739 SUPERFAMILY Chaperone J-domain 414 499 IPR036869 -
Viun6g01880 739 MobiDBLite consensus disorder prediction 694 739 - -
Viun6g01880 739 ProSitePatterns Nt-dnaJ domain signature. 480 499 IPR018253 -
Viun6g01880 739 SMART dnaj_3 435 495 IPR001623 -
Viun6g01880 739 Pfam Cleavage inducing molecular chaperone 546 643 IPR032843 -
Viun6g01880 739 Gene3D DnaJ domain 424 515 IPR036869 -
Viun6g01880 739 MobiDBLite consensus disorder prediction 642 664 - -
Viun6g01880 739 PRINTS DnaJ domain signature 458 473 IPR001623 -
Viun6g01880 739 PRINTS DnaJ domain signature 475 495 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01880 Viun-Chr6 25818585 25823912 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01880 1 703 Miscellaneous Gene Families AT5G49580 52.535 0.0 725
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01880 K09534 - gmx:100789594 1187.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01880 6 25818585 25823912 Viun6g01880 6 25818585 25823912 ECH