Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01879 ATGGAAGCAAAGTCACTGCTTCAGGGTTTTTCTCTTGCAGCTTCTTATCCCCTCCCTCAGCTTTCAAAAACCACCATGACGACAACCAACTGCGTTAGCTTCAATTTCAACCACAACCCATGCCTCATATTCGCAAATGGGTATCCTACTTCTTCTTCTTTGCTTCCATTTTCTATTCACAATAAGCCCAGAAAATCAGCATCACTGATTGTGAGTGCCCGCAAGAAAGACAAAAAAGACGATACCCATAGTTCCGTACCCCAACCTGACGAGGCCACAGGTTTCTTCCCCGAAGCTGTCTTACTTAAAAAGAGATCAGTTGAGGAAGAAGGGAAGCTTCTCCCGGAGTTTGAAGATGCCGAGGAAAGAGAACTCTTCGAGACGCTGATGCTTGAACTGGAAAGTGATATGAATGCTGAAATATTGCGGCACTATGAGGTCATGTACTTAATTCATGAGAAGCATGAAGATGAGGTAGCAGCTGTCAACGAGAAAATTCAGGAATTTATGAGGGAGAAGAAGGGTCAGATTTGGAGGCTGAATGATTGGGGTATGAGAAGGTTAGCTTACAAAATAAAGAAAGCTAATAAAGCACACTACATGTTGATGAACTTCGAGTTGGATGCAAAATACATCAACGACTTGAAGACTTTGTTGGACCAAGATGAAAGAGTTATTCGGCATCTTGTGATAAAGAGGGACGAGGCAATCACTGAAGATTGCCCTCCTCCTCCGGAGTTTCACACTCTGCGTGCAAATGCAGATGATAACGACGATGAAGAATTTGATGAGTATGAAGATGATTGGGATGGTGAAGATGAGCTTGATGATGATGATGATGGTATTATATACGTAGATGATGATGACGATGATGACATGGATTCAAGAAATGAGACATCTGCAAATGTTAGACAAGCAGAAGAAATAAGAGAGTTGAGGGCTGAGAACATTGGTAGATAA 960 0.4219 MEAKSLLQGFSLAASYPLPQLSKTTMTTTNCVSFNFNHNPCLIFANGYPTSSSLLPFSIHNKPRKSASLIVSARKKDKKDDTHSSVPQPDEATGFFPEAVLLKKRSVEEEGKLLPEFEDAEERELFETLMLELESDMNAEILRHYEVMYLIHEKHEDEVAAVNEKIQEFMREKKGQIWRLNDWGMRRLAYKIKKANKAHYMLMNFELDAKYINDLKTLLDQDERVIRHLVIKRDEAITEDCPPPPEFHTLRANADDNDDEEFDEYEDDWDGEDELDDDDDGIIYVDDDDDDDMDSRNETSANVRQAEEIRELRAENIGR 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01879 319 MobiDBLite consensus disorder prediction 71 86 - -
Viun6g01879 319 PANTHER MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S6 138 253 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Viun6g01879 319 Hamap 30S ribosomal protein S6 [rpsF]. 142 235 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Viun6g01879 319 Coils Coil 152 172 - -
Viun6g01879 319 MobiDBLite consensus disorder prediction 296 319 - -
Viun6g01879 319 SUPERFAMILY Ribosomal protein S6 142 242 IPR035980 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Viun6g01879 319 ProSitePatterns Ribosomal protein S6 signature. 184 193 IPR020815 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Viun6g01879 319 MobiDBLite consensus disorder prediction 250 319 - -
Viun6g01879 319 MobiDBLite consensus disorder prediction 71 92 - -
Viun6g01879 319 Pfam Ribosomal protein S6 144 232 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Viun6g01879 319 CDD bS6 144 233 IPR020814 GO:0003735|GO:0005840|GO:0006412|GO:0019843
Viun6g01879 319 FunFam 30S ribosomal protein S6 142 236 - -
Viun6g01879 319 MobiDBLite consensus disorder prediction 256 295 - -
Viun6g01879 319 Gene3D - 137 240 IPR014717 -
Viun6g01879 319 NCBIfam 30S ribosomal protein S6 143 234 IPR000529 GO:0003735|GO:0005840|GO:0006412|GO:0019843
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01879 - - gmx:100790128 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01879 6 25814754 25817229 Viun6g01879 6 25814754 25817229 ECH