Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01850 ATGGCTCTCAGATATTTCTGCACTACAAATATTTCGACCAGATATCATGATGTTTCTGATAAAACTCTTGTTCCATCTTCTTTTTCTGTGACAAACTCACGCATGCACAGTTCCACCCCAGAGACAAACACCAAGAACAAGTCTACTGCTGATAACTTGAAGAGCCTGGTCAACACTCTCGTGCTTCCTTCCATTTCATCTTCTCCACTTCACTCTCTCCACAAAGGTAACTGGGTCAAGCTCATTTGTGGTGCAAGCTTTGAGGATGTTGTTGATATCAGAAATCTCAGCCTGGTTTACACTCTTGCTGGAGTTGACTGCATTGACTGTGCTGCTGATGCATCAGTTGTTAGTGCCGTGAATGAAGGAATTGAAGCTGCAAGAGATATCGTGTGCCTTAGAAGGCCGTGGGTGATGATCAGTGTCAATGATGATAAAGATCTTCATTTTCGAAAGGCCGAATTTGACCCAGAGGAGTGTCCAGCAGACTGTTCACGGCCTTGTGAAAATGTGTGCCCTGCTAGTGCAATATCATTCCGTGGGAAATCTTCGGGAATTTCATATAATACTGAAGCACCAAGTGTGCTGAAGGATGGAGTCATAACAGAACGCTGCTATGGCTGTGGTCGCTGTCTTCCAGTTTGCCCCTATGATAAAATAAGTGGGAAATTTTCCAGTTCCATCTGTGATTATATGTTCTTAACTCGAGAGGTAACATATGTAAGAGATGCTATTACAACTGCTGATCTAATCCTGAGAGATGACGTTGATGCTATGGAGATACATACAAGTGGAAGACAGAGTACTTTGTTCAAACAACTCTGGAGTGCTCTGGGAGATTCAGTACAAAATTTGAAGCTTATAGCTGTTAGCTTACCTAATGGTGGTGATTCAACAATATCCTCCATGAACTATATGTTCTCCATCATGAAACCCAATCTTCAAAGCTTCAACTTATGGCAGTTAGATGGTCGTCCTATGAGTGGAGATATCGGGAGAGGAGCAACAAAGGAATCAATCGCCTTCGCTGTTCAACTAGCTAAAGCAAAAGAAAGACCTCCTGGTTTTCTTCAACTTGCTGGTGGAACCAATGCTCACACAATTGAAGGGTTGAAAAAAGAGGGACTCTTTCAAACAACTATCAGTGCAATAAACTCATCTGATTCACCACATGCTTTGATTGGTGGCATAGCATACGGTGGCTACGCACGAAAGATTGTTGGTAGAGTATTGAGATCAATGCAATCAGAACATGGTGGAGCTGCTTCAATTGAGGATCATTCTGAGTATCTCTTGATGGCTCTTAAGGAAGCACTTGCTTTGGTGGGGCCTGTTAAATGTCTATGA 1347 0.4261 MALRYFCTTNISTRYHDVSDKTLVPSSFSVTNSRMHSSTPETNTKNKSTADNLKSLVNTLVLPSISSSPLHSLHKGNWVKLICGASFEDVVDIRNLSLVYTLAGVDCIDCAADASVVSAVNEGIEAARDIVCLRRPWVMISVNDDKDLHFRKAEFDPEECPADCSRPCENVCPASAISFRGKSSGISYNTEAPSVLKDGVITERCYGCGRCLPVCPYDKISGKFSSSICDYMFLTREVTYVRDAITTADLILRDDVDAMEIHTSGRQSTLFKQLWSALGDSVQNLKLIAVSLPNGGDSTISSMNYMFSIMKPNLQSFNLWQLDGRPMSGDIGRGATKESIAFAVQLAKAKERPPGFLQLAGGTNAHTIEGLKKEGLFQTTISAINSSDSPHALIGGIAYGGYARKIVGRVLRSMQSEHGGAASIEDHSEYLLMALKEALALVGPVKCL 448
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01850 448 SUPERFAMILY 4Fe-4S ferredoxins 131 222 - -
Viun6g01850 448 ProSitePatterns 4Fe-4S ferredoxin-type iron-sulfur binding region signature. 205 216 IPR017900 -
Viun6g01850 448 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 151 182 IPR017896 -
Viun6g01850 448 Pfam Iron-Sulfur binding protein C terminal 250 443 IPR021039 -
Viun6g01850 448 ProSiteProfiles 4Fe-4S ferredoxin-type iron-sulfur binding domain profile. 196 225 IPR017896 -
Viun6g01850 448 Gene3D - 157 232 - -
Viun6g01850 448 PANTHER PHOTOSYSTEM I IRON-SULFUR CENTER-RELATED 73 221 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01850 Viun-Chr6 25595403 25598850 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01850 - - var:108342585 717.613
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01850 6 25595403 25598850 Viun6g01850 6 25595403 25598850 ECH