Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01839 ATGGGGTTTGTCGTGGAAAATATATTTGAGTGGCAATTTGCGATTAGAGGACCTCGTGATACTGAATTTGAGGGTGGTATTTATCATGGACGGATCCAGCTGCCTTCAGAGTATCCATTCAAACCCCCTTCGTTTATGTTGTTGACACCAAATGGTCGTTTCGAGACTCAAACCAAGATTTGCTTGAGCATTTCAAATCATCACCCTGAGCATTGGCAACCATCATGGAGCGTGAGGACTGCTCTAGTTGCACTGATTGCTTTCATGCCAACCAACCCAAATGGTGCATTGGGATCTTTAGACTACAAGAAAGACGAGAGGCGTACCCTGGCTGTAAAATCTCGTGAAGCTCCTCCTAAATTTGGGACTCCTGAACGTCAAAAGCTGATCGATGAGATACACGAGTACATGTTAAGCAAGGCACCCCCAGTTCCTCAACCAAGCGCCACAGAGGCTTCCGAAGAGCACCCTAGAAATGAGGAGGCTGAGGCGCTGGTTGATTCACCTAATCCTGAGTCTTTACCAGCTGGAGAGAGGATTCCAGATGAAGAAGGTGATGGAATTGTCGAAGAACAAGAAGTCCTTGCAAATGCTAACCCTGCAGGAGTTGAAGTTTCAAGGGAGATTCAATCAAATGTTTCAAGGAATGAAGTGCCCCAAAGGTCAGATACAAGTGCAAGGGTTCACAATCCCAGGCCAGAGACAAGGGTCCAGAAACCTGATGATAGGCTGTTCACGGTGGCAGCTATCGGACTCGCTATTGCTATTGTGGTTCTTTTGCTCAAAAAGTTCATTAAATCTACCGAACATGGGGCACTTTTCTCCAATAATGGATCTTGA 840 0.4607 MGFVVENIFEWQFAIRGPRDTEFEGGIYHGRIQLPSEYPFKPPSFMLLTPNGRFETQTKICLSISNHHPEHWQPSWSVRTALVALIAFMPTNPNGALGSLDYKKDERRTLAVKSREAPPKFGTPERQKLIDEIHEYMLSKAPPVPQPSATEASEEHPRNEEAEALVDSPNPESLPAGERIPDEEGDGIVEEQEVLANANPAGVEVSREIQSNVSRNEVPQRSDTSARVHNPRPETRVQKPDDRLFTVAAIGLAIAIVVLLLKKFIKSTEHGALFSNNGS 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01839 279 Gene3D Ubiquitin Conjugating Enzyme 2 155 IPR016135 -
Viun6g01839 279 CDD UBCc 6 96 IPR000608 -
Viun6g01839 279 ProSiteProfiles Ubiquitin-conjugating (UBC) core domain profile. 1 134 IPR000608 -
Viun6g01839 279 SUPERFAMILY UBC-like 6 99 IPR016135 -
Viun6g01839 279 SMART ubc_7 2 142 - -
Viun6g01839 279 PANTHER UBIQUITIN-CONJUGATING ENZYME E2 6 98 - -
Viun6g01839 279 MobiDBLite consensus disorder prediction 140 183 - -
Viun6g01839 279 MobiDBLite consensus disorder prediction 204 226 - -
Viun6g01839 279 Pfam Ubiquitin-conjugating enzyme 6 94 IPR000608 -
Viun6g01839 279 FunFam ubiquitin-conjugating enzyme E2 32 2 143 - -
Viun6g01839 279 MobiDBLite consensus disorder prediction 197 239 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01839 Viun-Chr6 25539071 25541849 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g01839 6 279 Miscellaneous Gene Families AT3G17000 60.870 1.49e-109 317
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01839 K10578 - gmx:100798396 475.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01839 6 25539071 25541849 Viun6g01839 6 25539071 25541849 ECH