Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g01708 ATGGCAACGTGGGGTGCACATTCAATGTTGTTATCCCATGGGGAAGGCACAAGCACCCCCGGTGTATCTGTAAAACCAGGTCTTAGTGTTAGAGGGGATTTAAGGTTTCACAGAACAAGAGAGTTTAAATATGCTCCTCGTGTGGTAGTGCTCAAAGTGTTTTCACCTGCCAGAAAGCCGACACGCTTGTGCTTGTTAAGACCTTATTGTAGTTTAGGGGGGAAACACAACCAAGGGTTGGATTATTCTTCACCAGCTACTACTACACAAATACCACGAATATTCAAATTCGTTGCTGATAGAATGCTTGTTGTTCTCAATGATTGGAATTGGAATAATTTACGCATGATGGGAGTAGCTGGCATATTGGTATCAATTTTAATGATCACTCCATCAGCTGATGCTGTTGATGCTCTTAAAACTTGTGCTTGCTTATTGAAGGATTGCAGGTTGGAACTGGCTAAGTGTCTTTCAAACCCATCTTGTGCTGCCAATATTGCATGTCTTCAAACTTGCAATAATCGACCTGATGAGACTGAATGCCAAATTAAATGTGGGGACCTGTTTGAAAACAGTGTGGTTGATGAATTCAATGAGTGTGCAGTCTCACGGAAGAAATGTGTACCTAAGAAATCTGATGTGGGAGAATTTCCTGCTCCAAATCCTGATGTCCTTGTTAATAGCTTCAACATTGCGGATTTCAGTGGCAAATGGTTCATCACTAGTGGCTTAAATCCTACCTTCGATACCTTTGACTGCCAATTACATGAGTTCCACACAGAATCCAATAAGCTTGTGGGTAATTTGACATGGAGAATACAGACTCCGGATGCTGGATTTATTACTAGGTCTGCTGAACAGAAATTTGTTCAAGATCCTTCCTATCCTGGGATCCTCTACAATCATGACAACGAGTACCTTCACTATCAAGATGACTGGTATATTTTGTCATCAAAGATTGAGAATAAACCAGATGACTACGTATTTGTATACTACCGAGGCAGAAACGATGCATGGGATGGTTATGGAGGTGCTGTAGTGTACACAAGAAGTGCAGTTTTGCCAGAATCTATAGTTCCTGAACTTGAAAGAGCAGCAAAGAATGTAGGAAGAGACTTTAGCAAATTCATCAAGACAGATAACACATGTGGACCAGAGCCTTCCCTGGTGGAAAGGTTGGAGAAAAAGGTAGAGGAAGGAGAGGAGACCATTGTGAGGGAAGTTGAACAGTTAGAAGAAGAGGTGGAGAAGGTGGGGAAAACGGAAGTCACATTGTTTCAGAAGTTGGCAGAAGGGTTCAAAGTATTTCAAGAAGATGAGGAAAACTTCTTGAAAGGACTTTCAAAAGAAGAAATGGAGGTACTTAATGGCCTCAAAATGGAAGCCAGAGAAGTAGGGAAGCTCTTTGGGAATGCCTTGCCCATAAGGAAACTAAGATAA 1440 0.4167 MATWGAHSMLLSHGEGTSTPGVSVKPGLSVRGDLRFHRTREFKYAPRVVVLKVFSPARKPTRLCLLRPYCSLGGKHNQGLDYSSPATTTQIPRIFKFVADRMLVVLNDWNWNNLRMMGVAGILVSILMITPSADAVDALKTCACLLKDCRLELAKCLSNPSCAANIACLQTCNNRPDETECQIKCGDLFENSVVDEFNECAVSRKKCVPKKSDVGEFPAPNPDVLVNSFNIADFSGKWFITSGLNPTFDTFDCQLHEFHTESNKLVGNLTWRIQTPDAGFITRSAEQKFVQDPSYPGILYNHDNEYLHYQDDWYILSSKIENKPDDYVFVYYRGRNDAWDGYGGAVVYTRSAVLPESIVPELERAAKNVGRDFSKFIKTDNTCGPEPSLVERLEKKVEEGEETIVREVEQLEEEVEKVGKTEVTLFQKLAEGFKVFQEDEENFLKGLSKEEMEVLNGLKMEAREVGKLFGNALPIRKLR 479
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g01708 479 SUPERFAMILY Lipocalins 218 387 IPR012674 -
Viun6g01708 479 Pfam VDE lipocalin domain 141 381 IPR010788 GO:0046422
Viun6g01708 479 ProSitePatterns Lipocalin signature. 230 241 IPR022272 -
Viun6g01708 479 PANTHER VIOLAXANTHIN DE-EPOXIDASE, CHLOROPLASTIC-RELATED 98 467 IPR044682 GO:0010028|GO:0046422
Viun6g01708 479 Gene3D - 212 393 IPR012674 -
Viun6g01708 479 CDD lipocalin_VDE 213 387 - -
Viun6g01708 479 Coils Coil 390 421 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g01708 Viun-Chr6 24720561 24723990 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g01708 K09839 - gmx:100778118 813.527
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g01708 6 24720561 24723990 Viun6g01708 6 24720561 24723990 ECH