Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00972 ATGGATTTCTTGGCTAAATACCAGTTTGATTTTAATGCTTGCATACACGAAGGAATATCTTATTTATCCAGAGAACAAGAAAGGGAAGCCTTAAGGAGTTTGAATTCTGCACATGATAGTGAGTGGTCAGACATTTATAAATTAAAAGATGTCAGGGACATGCCGTTGCTTAGTGCAGCAGACATTTTGTTCACTGCACGAATGAAAAACAAATTCCGTGGATGGCGTGATGGGTTATTACATGAGCAAAATCTAGAAGACCAGATTCAAGGAATTACAGGGGACTCAAAATTTCAAGAGATTTTTTTTGAGATGCATCCGGCTCTTAGCCTTAATGGATTCACCTCTCACCAGCTTAAATTGATTCAGTCGGTCATCAGAAAACAATTCAAAGATCTTTCTTATATCAGTGTAAACAGTGAGGCTTCCGGTTTACAGCATTTAGTTGTGTATACAGACTCAAAGGATGAGTTAAACTTACTTCTGAAAAAAGTGAAAGAAGAAAATCTCGGCGTAGAAAAGATGAAAATTCAAGGTGCTGTAGGACTTCGCCACGTTATTGATCTCCTTTCATCGGAACAGAAGTTGATTGTTGGTCACAATTGTTTTCTAGATATTGCTCATGTCTACAGCAAATTTATAGGCCCTCTTCCTGGTACTCCTGAAGAGTTTGTTACCTCAGTTAACAAGTGCTTTCCGCACATTGTTGACACCAAGATACTTCTGAACACTAATTTTATGCTCCAGGAAAAGATGAAAAGATCCAGAAAATCACTGGCAGCTGCATTCACTTCATTTTGCCCACAAATTGCAGCTGGCTCAAGAACCAGTTATCTAGGTTCACTCTCACATGTGAAAGTGGACGTTGAAGTTGATGATGTGAGATCATCCAGCTGGAACCCTGGAGGCAAGCATGCGGCAGGATATGATGCCTTCATGACTGGATGCATCTTTGCCCAGTTATGCAGTGATTTAGGTATTGATTACAAACTCCACGATTCTTCAAAACAATTAGCCCTTGACGAGAAACTACAGAAATATGTTAATCGTTTATATCTTAGTTGGATGCATGGGGACATTATTGATCTAAGTACTGGTAATAAGGTTGCGGATTCTTCACCCAGCCATAGCCTCAGGAAGCGGTACCCAACAATTTTGTTTGAGAACATTGTTATTATTTGGGGATTTCCTTCTACGCTGAAGGCAATTGAAGTAAGAGAGTGCATATCTAAAGTATTTGGACCAACTTCTATAGTTTCTGTCTTCCACCTGGATGCAACTGCAGTATTCGTTCAGTTTAGCAAAACAGAACTAGTTTCTGATTTTCTTTTATTGAAGAACACCTTAGAGAGAAGTGATGGTGCACTATTGGTTTTGCATCCACTGTCAAAACTTTTGGAAGGTGGAAATACATGTGCTGTTAATTATGGTACTTATAAAGAAATTTGTGGCTCACCCTTATCAGAATGTCTGTTTGCTGATCAGGCAAAGGCAGTTGGTATAAAGTGGAAGACCAAATTGCCAGAAAAGGTAGTATTGGGGGCCGAAGAACATGAAAATTCAAGTGTAAGAGGTAATGTAAATATTGCTATGGAGGATGTGGAAAGGACCAAGCAGAACACAATTGATGAATTGCGAAATGCTCCATCTCGGAGACAAGTCTCCCCATATGGGGATGAAGATTCTTGTGTTGCAGAAGCCAACTTGTGA 1710 0.3953 MDFLAKYQFDFNACIHEGISYLSREQEREALRSLNSAHDSEWSDIYKLKDVRDMPLLSAADILFTARMKNKFRGWRDGLLHEQNLEDQIQGITGDSKFQEIFFEMHPALSLNGFTSHQLKLIQSVIRKQFKDLSYISVNSEASGLQHLVVYTDSKDELNLLLKKVKEENLGVEKMKIQGAVGLRHVIDLLSSEQKLIVGHNCFLDIAHVYSKFIGPLPGTPEEFVTSVNKCFPHIVDTKILLNTNFMLQEKMKRSRKSLAAAFTSFCPQIAAGSRTSYLGSLSHVKVDVEVDDVRSSSWNPGGKHAAGYDAFMTGCIFAQLCSDLGIDYKLHDSSKQLALDEKLQKYVNRLYLSWMHGDIIDLSTGNKVADSSPSHSLRKRYPTILFENIVIIWGFPSTLKAIEVRECISKVFGPTSIVSVFHLDATAVFVQFSKTELVSDFLLLKNTLERSDGALLVLHPLSKLLEGGNTCAVNYGTYKEICGSPLSECLFADQAKAVGIKWKTKLPEKVVLGAEEHENSSVRGNVNIAMEDVERTKQNTIDELRNAPSRRQVSPYGDEDSCVAEANL 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00972 569 Pfam CAF1 family ribonuclease 1 318 IPR006941 -
Viun6g00972 569 SUPERFAMILY Ribonuclease H-like 1 330 IPR012337 -
Viun6g00972 569 Gene3D - 149 367 IPR036397 GO:0003676
Viun6g00972 569 PANTHER POLY A -SPECIFIC RIBONUCLEASE/TARGET OF EGR1, MEMBER 1 1 481 - -
Viun6g00972 569 MobiDBLite consensus disorder prediction 548 569 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00972 Viun-Chr6 19277089 19281230 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00972 K01148 - gmx:100784997 911.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g00972 6 19277089 19281230 Viun6g00972 6 19277089 19281230 ECH