Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00926 ATGAACGTGGGCGACCTCAACAATGTATGGGAAATCAGAGCTCTGAAGAGGAAACCCGCGGCAGAAGAAGCGACGAAGATGTTGGAGAAGATCGCTAAACAGGTCCAACCCATCATGCGCAAACACAAATGGAGGGTCAAGATCCTCTCTGAATTTTGCCCAGGAAATCCATCTCTCCTGGGAGTGAATGTTGGAGCTGGTATACATGTGAAGTTGCGGTTACGGAAGCCAAACAGGGATTTGGACTTCTACCCATTTAATCAAGTTCTTGATACGATGCTTCATGAGCTTTGCCATAATGCCCATGGCCCTCATAATGCCAACTTCTACAAGCTTTGGGACGAGCTTAGAAAGGAATGTGAAGAGTTGATGGCTAAGGGAATAACTGGCGCAGGACAGGGTTTTGACCTTCCAGGAAGGCGTTTAGGTGGTTATTCCCGGCAACCTCCACTTCCATCCCTCCGTAAAACTGCACTGGAAGCTGCAGAAAAGAGAGCACGATTGGGATCTCTTCTTCCATCTGGACCAAAACGTATTGGTGGTAATAGTATTATAATGAAAGCCCTTAGTCCAGCACAAGCTGCTGCAATGGCTGCAGAACAGAGATTGCAGGATGAAATATGGTGTGGTTCTCAATCTTCCGCACATTTGGATAAGGAAGATGTTGACTATGATGATGCTGAGAACATTGTGCATAAGGGGGAAAATGTGGGAACCTCAAGACTACCAGATAATTCTACTCTACCATCAAAGCTCTTATCTCGAAAAAGAAGTCAGGATACCTCGTCAAGTTTACTTGGCTCATCATCTAGTAGTTCTGAATTAATAGATTTGACTATGGACACACCAAAAAGGGGATCTAAACGAAGTTGCTGTGGATCGGAAACCATTTCACATTCTCAATCCAATTTTCATGAAGGACCTAGTTCGGCAAATTTATCAAGTGTGTCTGTATCTGGTGATAGTAGAACATTTCGTTCTGATGAATCTGGAATGTGGGAATGTACGATGTGCACCCTATTGAACAACAAATTGGCTCCCATTTGTGAATTGTGCGGCACTCACCAGCCAAAAGATGTTAGTACCAAATACAACAGTTGGTCTTGCAAATTCTGTACGTTGGAGAACAATGTGAAGTTGGATAAGTGCTCTGCCTGTGATCAATGGAGATACTCTTGTGGTCCACCAGTGTCAACCCTGGCACCTAACGTTGGTACATAG 1221 0.4439 MNVGDLNNVWEIRALKRKPAAEEATKMLEKIAKQVQPIMRKHKWRVKILSEFCPGNPSLLGVNVGAGIHVKLRLRKPNRDLDFYPFNQVLDTMLHELCHNAHGPHNANFYKLWDELRKECEELMAKGITGAGQGFDLPGRRLGGYSRQPPLPSLRKTALEAAEKRARLGSLLPSGPKRIGGNSIIMKALSPAQAAAMAAEQRLQDEIWCGSQSSAHLDKEDVDYDDAENIVHKGENVGTSRLPDNSTLPSKLLSRKRSQDTSSSLLGSSSSSSELIDLTMDTPKRGSKRSCCGSETISHSQSNFHEGPSSANLSSVSVSGDSRTFRSDESGMWECTMCTLLNNKLAPICELCGTHQPKDVSTKYNSWSCKFCTLENNVKLDKCSACDQWRYSCGPPVSTLAPNVGT 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00926 406 MobiDBLite consensus disorder prediction 239 278 - -
Viun6g00926 406 ProSitePatterns Zinc finger RanBP2-type signature. 333 352 IPR001876 -
Viun6g00926 406 ProSiteProfiles Zinc finger RanBP2 type profile. 329 358 IPR001876 -
Viun6g00926 406 ProSitePatterns Zinc finger RanBP2-type signature. 367 386 IPR001876 -
Viun6g00926 406 Gene3D - 327 366 - -
Viun6g00926 406 Pfam WLM domain 8 203 IPR013536 -
Viun6g00926 406 MobiDBLite consensus disorder prediction 234 327 - -
Viun6g00926 406 ProSiteProfiles WLM domain profile. 1 204 IPR013536 -
Viun6g00926 406 PANTHER DNA-DEPENDENT METALLOPROTEASE WSS1 1 406 - -
Viun6g00926 406 SUPERFAMILY Ran binding protein zinc finger-like 328 356 IPR036443 -
Viun6g00926 406 ProSiteProfiles Zinc finger RanBP2 type profile. 363 392 IPR001876 -
Viun6g00926 406 SMART zf_4 331 355 IPR001876 -
Viun6g00926 406 SMART zf_4 365 389 IPR001876 -
Viun6g00926 406 MobiDBLite consensus disorder prediction 289 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00926 Viun-Chr6 18942921 18945846 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00926 K22685 - gmx:100795976 649.818
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g00926 6 18942921 18945846 Viun6g00926 6 18942921 18945846 ECH