Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00894 ATGGCAACAAACCAGATCCTAAGAGAACTACAATGGGCTCAGCAAGCCATCAAATCAGAGGGCCTGAATCTGCACAGTATTTCCTTCTACCTCTCTCAACCAACTTCAGCACCTGGGAGACACAACTCCTCCTTGAGAAACTTGGAGTTCCACAGAGTTGAATGGGACTCACAACAGGTAAGACATCTTGGCACCTTGCTAGGGAATAACCAAAATGTACAGCATTTGGTTTTTAGAAGGAACAGGTTCAATGGAAAAAGCCTATCAGACCTTTCTGACATTGTGAAGGCAAATAAAGTGATCAAAGAGATCATGCTTTCAGAATCAGGCATAGGGTCTGTTGGAGCTGCACTTATTGCTTCTGCTCTTATGGTGAATGACAGTTTGGAGGAGCTTCAGATATGGGAAGACTCAATAGGTTCAAGAGGTGCTGAGGAGCTTTCGAAGATGATTGAAGTTAACTCAACTCTTAAACTGTTGACAATTTTTGACTCAAATGCCATCACAGCTACACCTCTTATTTCTGCAGTTTTGGCAAGGAACAGAAGAATGGAAGTTCATGTTTGGAGTGGGGAGAATAGGGAAAAGAGTTCCAAGGTGGTTGAGTTTGAACCGGAGAACAGCACACTTAGAATTTACAAGCTTAACCTCTCAGGGACTTGTAGAGTTACCTGCTCTTTAGGCATGAACTTCACTGTGAAGTCCCTTGACATGACAGGAGTAAGGCTAAAATCGCGGTGTGCCAAGGAGTTTAGGTTGGTTTTGGAACAAAACCAGACCCTCAAAGAGGTAAATTTGTCTAGAACATGCCTTAAAGATAAGGGCATTGTGTATATTGCAGCAGGCCTCTTCAAGAACAAAACTCTGCAAACCTTACACCTGAGTGGAAATTGGTTCAGTGGAATGGGTGTGGAGCATCTATTATGCCCTTTGAGTAGATTTTCAGCACTTCAAAGGCAAGCCAACATTACTTTGACGTGTATTACTTTTGGAGGAGAAAGAACAAGAATAGGAAGGGATGGTCTAGCTGCTGTTATACAGTTTCTTACAACAAATGAAACAGTGAGGAAGTTGGGAATTCACGATGATGAGAGTTTGAGATCAGATGACTTTGTTAAAATCTTCAAGAGTTTGGAGAAGAATGCTAGCTTGAAATGCTTGTCTCTTCAAGGATGCAAACGTGTGGAGGGAGAGCTACTGCTGCAGACAATTATGGAGACACTGCAGATAAATCCTTGGATTGAAGATATTGATCTCTCCAGAACACCTTTACAAAACTCTGAAAAGACTCAGCGGATTTATCAGAGATTAGGCCAGAATGAGAAGACTGAACCAGATATGGATTCTGTCAAGGATATGCCTCTAACAGAACCCAAGAGTTGCAGAGTTTTCTTTTGTGGCCAAGAATGTGCAGGCAAAACCTCACTTTGTCATTCAATATCACAAAATTTCTCTGCTTCGGCGCTTCCCTACTTGGATCAAGTCAGAACAATAGTGAACCCAGTGGAGCAGGCTGTCAAATCAATAGGAATGAAGATAAAAACTTTCAAGGATGAGGATACAAGGATTTCAATATGGAATCTTGCTGGTCATCACGAGTTCTTATCTCTCCATGATCTTATGTTCCCAGGGCATGGGAGTGCATCATTTTTCATCATCATATCAAGTTTATTCCGGAAACCAAGTAACAAAGAACCAAAAAGCTCAACAGAAATTGAGGAGGACCTGCAGTATTGGCTCAGGTTCATAGTTTCCAACTCTAAAAGAGCAATACAACAATGCATGCTACCAAGTGTTGCTGTTGTTCTCACACACTCTGACAAAATCAACCAACCATCACAAAATTTGCAGCTCACAGTAGAGTCAATTCAGAGACTTAGAGACAAGTTTCAAGGCTTTGTTGATTTTTACCCAACTGTATTCACAGTTGATGCAAGATCATCAGCATCAGTCAGTAAACTCACTCAGCATATCCGAAAGACGAGCAAGACAATTCTCCAAAGAGTGCCACGGGTTTATCAACTTTGCAATGATCTGATACAGATTTTATCAGACTGGAGATCTGAGAACTACAACAAGCCAGCCATGAAGTGGAAGGAATTTGGTGAGCTATGCCAAGTGAAAGTTCCACCTTTGAGGATTCGATCAAGACATGACAACAAAGAGAAGGTAGAGATGAAGAGAAGAGCTATTGCTACCTGTCTTCATCACATTGGTGAAGTGATTTATTTTGATGAGTTGGATTTTCTAATTTTAGATTTTGAGTGGTTCTGTGGTGAAGTCCTTGGTCAGCTCATAAAGTTGAATGTTAAGAAGCAACACTCTGAAAACAATGGATTTATTAGCAGGATGGAATTAGAAAAAATCTTAAGAGGAAGTTTGCAGAGCCCTATTCCTGGTATGGGTTCAAAGGTGTTTGAGAATTTAGACGCCAGCGACCTTGTGAGGATGATGCTAAAACTTGAACTTTGTTATGAGGAAGATCCATCAGATCCAAATTCTCTGCTATTGATTCCTTCTATTCTTGAAGAAGGCAGAGGAAAGCCTCAGAGGTGGCAGCTAAGCATGCCAGACTGCGTTTACGCAGGACGTCATCTTGAGTGTGATGATTCAAGCCACATGTTCCTAACTCCAGGTTTCTTCCCTCGTTTGCAGGTGCACCTTCACAACAGAATAAAGGCTGTTAAGGATCAGCATGGTGCAACTTACAGTCTTGAGAAGTACCTTATTTCAATCAGCATTAATGGAATCTACATAAGAGTAGAACTTGGAGGAGAATTGGGTTACTATATTGATGTCCTTGCATGCTCCACCAAAAACTTGACAGAAACTTTAAGAGTCATTCATCAGATTGTAATCCCCGCAATCCAAAGTGTTTGCCAAGGGATCACCTTGACTGAGAATGTCTTAAGACCTGAATGTGTGAGAAAACTGACACCTCCTAGATACAGAAAAACTCAATTTGCTCCTCTGCAGCAACTGAAACAAGCACTACTTTCACTTCCAGCAGAAAGCATGTATGACTATCAACACACATGGAGTGCAGTCCTAGACTCTGGTAAACCTATTCTCCAAGATGGATTTGATTTTGCACGAGACCTTTTATCTGATGATGACTTCCGGGAAGTTCTGCATCGACGGTATAACGACCTTTACAATCTTGCACAAGAGCTGCAAGTTCCACCTGAAAATAATAACCCTGAAGAGCAAGGTCAATCTATAACCTTAAGAGATGAAGCTGCAAGGGTTGAACCAACCTTTGGTGGCATTGCAAAAGGGGTTGAAGAAGTTCTGCAAAGACTCAAGATTATTGAGCAAGAAATCAGAGACTTGAAGCAGGAAATCCAGGGGCTGAGATATTATGAACATAGACTTCTCCTTGAGCTTCATCGCAAAGTAAACCACCTTGCAACCTTTAATGTGCAGGTTGAGGAGAGGAAAGTCCCCAACATGATATATTTTGTAAGGACAGAAAACTACACAAGGAGACTGGTCACCACCATGCTTTCTGGCATGAATGCTCTCCGGCTTCACATGTTATGCGAGTTCCGGGGACAAATGCATGTTGTTGAAGATCAGATGGGGTGTGAAATCATGCAAGTTGATAATGCTGCTGTGAAGTCTTTGGCTCCATACATGAAGAAGTTCATGACATTGGTAACTTTGGCTCTTAAAATAGGAGCTCATCTTGCTGCTGGAATGGGGCAAATGATACCTGACTTGGGTAAGGAGGTGGCTCACTTGGCTGGCTCTTCAGTTCTCTGTGGTGCAGCTGGGGCAAGTGCAGCTGGAGTTTTAGGTGCTGCCGCTATGGGTCGTCGAAACAGGTCCATGGAAGGTTCAAGCGACATTCAACAAGACTTAAGAGCAGCACAACAATGGGTGGTTGATTTCTTAAGGGAGAGGAAGTGTTCCTCAGGGAAGGATATTGCAGAAAAGTTTGGACTGTGGCGAGTCAGGTACAGAGACAACGGTCAAATTGCATGGATATGCAGGAGGCACATATATGCAAGATCTGCAGAGATAATTGAAGTACCAATTTGA 4044 0.4221 MATNQILRELQWAQQAIKSEGLNLHSISFYLSQPTSAPGRHNSSLRNLEFHRVEWDSQQVRHLGTLLGNNQNVQHLVFRRNRFNGKSLSDLSDIVKANKVIKEIMLSESGIGSVGAALIASALMVNDSLEELQIWEDSIGSRGAEELSKMIEVNSTLKLLTIFDSNAITATPLISAVLARNRRMEVHVWSGENREKSSKVVEFEPENSTLRIYKLNLSGTCRVTCSLGMNFTVKSLDMTGVRLKSRCAKEFRLVLEQNQTLKEVNLSRTCLKDKGIVYIAAGLFKNKTLQTLHLSGNWFSGMGVEHLLCPLSRFSALQRQANITLTCITFGGERTRIGRDGLAAVIQFLTTNETVRKLGIHDDESLRSDDFVKIFKSLEKNASLKCLSLQGCKRVEGELLLQTIMETLQINPWIEDIDLSRTPLQNSEKTQRIYQRLGQNEKTEPDMDSVKDMPLTEPKSCRVFFCGQECAGKTSLCHSISQNFSASALPYLDQVRTIVNPVEQAVKSIGMKIKTFKDEDTRISIWNLAGHHEFLSLHDLMFPGHGSASFFIIISSLFRKPSNKEPKSSTEIEEDLQYWLRFIVSNSKRAIQQCMLPSVAVVLTHSDKINQPSQNLQLTVESIQRLRDKFQGFVDFYPTVFTVDARSSASVSKLTQHIRKTSKTILQRVPRVYQLCNDLIQILSDWRSENYNKPAMKWKEFGELCQVKVPPLRIRSRHDNKEKVEMKRRAIATCLHHIGEVIYFDELDFLILDFEWFCGEVLGQLIKLNVKKQHSENNGFISRMELEKILRGSLQSPIPGMGSKVFENLDASDLVRMMLKLELCYEEDPSDPNSLLLIPSILEEGRGKPQRWQLSMPDCVYAGRHLECDDSSHMFLTPGFFPRLQVHLHNRIKAVKDQHGATYSLEKYLISISINGIYIRVELGGELGYYIDVLACSTKNLTETLRVIHQIVIPAIQSVCQGITLTENVLRPECVRKLTPPRYRKTQFAPLQQLKQALLSLPAESMYDYQHTWSAVLDSGKPILQDGFDFARDLLSDDDFREVLHRRYNDLYNLAQELQVPPENNNPEEQGQSITLRDEAARVEPTFGGIAKGVEEVLQRLKIIEQEIRDLKQEIQGLRYYEHRLLLELHRKVNHLATFNVQVEERKVPNMIYFVRTENYTRRLVTTMLSGMNALRLHMLCEFRGQMHVVEDQMGCEIMQVDNAAVKSLAPYMKKFMTLVTLALKIGAHLAAGMGQMIPDLGKEVAHLAGSSVLCGAAGASAAGVLGAAAMGRRNRSMEGSSDIQQDLRAAQQWVVDFLRERKCSSGKDIAEKFGLWRVRYRDNGQIAWICRRHIYARSAEIIEVPI 1347
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00894 1347 Pfam Leucine Rich repeat 285 307 IPR001611 GO:0005515
Viun6g00894 1347 Pfam Leucine Rich repeat 257 280 IPR001611 GO:0005515
Viun6g00894 1347 SUPERFAMILY RNI-like 22 440 - -
Viun6g00894 1347 Coils Coil 1094 1121 - -
Viun6g00894 1347 Gene3D - 460 664 IPR027417 -
Viun6g00894 1347 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 458 661 IPR027417 -
Viun6g00894 1347 Gene3D Ribonuclease Inhibitor 319 449 IPR032675 -
Viun6g00894 1347 Gene3D Ribonuclease Inhibitor 193 318 IPR032675 -
Viun6g00894 1347 SMART LRR_RI_2 258 285 - -
Viun6g00894 1347 SMART LRR_RI_2 126 153 - -
Viun6g00894 1347 SMART LRR_RI_2 286 313 - -
Viun6g00894 1347 SMART LRR_RI_2 98 125 - -
Viun6g00894 1347 Gene3D Ribonuclease Inhibitor 35 188 IPR032675 -
Viun6g00894 1347 PANTHER PROTEIN TORNADO 1 1 1346 - -
Viun6g00894 1347 Pfam C-terminal of Roc, COR, domain 725 893 IPR032171 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00894 Viun-Chr6 18678382 18683496 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00894 - - gmx:100817598 2403.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g00894 6 18678382 18683496 Viun6g00894 6 18678382 18683496 ECH