Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00856 ATGTGGAATGCACGCGTTCTTCTCCGTTCATTCTCTCTCCTACATTTTCTTGTTCTTCACTCGGTGCTGCCTCAGGTCTCTGCACAAGGATCCAACGCAACCACTTGGAACACTCTCTCTGGAAATCCACCGTTGGTCATAGCTCGTGGTGGTTTTTCAGGGATATTTCCCGATTCCAGTGACTTTGCGTATCTTTTTGCTGTAGCAGCTAGTTTAAAAAATGTCATTCTATGGTGTGACGTGCAATTAACGAAAGATGCGCAGGGGATCTGCATCCCAGACCTCAAGCTTGAAAATGCCACTAATATTGCTCAAAATGCTAAATATAAAAGTAGCACTTACCCAGTTAATGGTGCAACGACCAGTGGCTATTTTTCTATGGACTACACCTTAGAGGATCTACGTTCCAACAATGTCTTCCTGGTTCAGGGAATTTACACACGAACAGAGAAGTTTAATAACAATGCATTCCAAATTCTTACTGTGAATAATGTGGTTAAAACAGCATCCCCGCCAGGATTGTGGTTGAATATACAGCATGATGCATTCTACACACAACACAATTTGAGTATGAAAAACTTCGTACGTTCTGTTTCCACAACAGTAAATGTCAGTTACATCTCATCACCTGAAGCTGGTTTCCTCAGAAGCATAAGAACAGACATCAATCCAAAAAGAACAAAACTGGTCTTCAGGTTTATGGAAAAAGGGGAAGTAGATCCATCAACCAACCAGACTTATGCTACACTGTTAAAAAATCTAACATCTATCAAGACATTTGCTTCAGGAATTCTTGTTCCCAAAGACTACATATGGCCTGTGGATCTAAAGAGTCATTATCTACAACCGCATACATCTTTGGTCTCCGATGCGCACACAGTGGGGCTGGAAGTCTTTGCTTCAACTTTCGAGAATGATATTCCAATCAGCTATAATTACAGCTATGACCCTGTTGCCGAGCACCTGAGTTTCATTGAGAATGGAAACTTCTCTGTTGATGGTGTGTTGTCTGACTTCCCCCTAACGTCATCTACAGCTATAGACTGCTTTGCTCACAATGGTCTCAATGCTCCAAAAAAAGTTAACACTTTGGTCATCTCAAAATATGGAGCCAGTGGAGATTATCCTCCTTGTACCGACTTAGCGTATGAAAAGGCTTTTTCAGATGGTGCAGATGTTCTCGACTGTCCTGTTCAGATTTCAAAAGATGGAATACCATTTTGCTTTAGCTCTATTGATCTTATCCCGAACACAAATGTTGCTCAGTCAAGATTCAACGACCTTAGCAAATCTATTCCAGAGATCCAATCTGGTGATGGAATATTTGCATTCGACTTGTATTGGAATAATATATCAAGCTTGACCCCCTTAATGCTGAAACCGTTTAGCACTTTGTATAGAAACCCAAAATTTAACGAGAAAGTATCATTGTTAACATTGTCCGAGTTCTTGAATTTCACACAAGGTCGTCCTTCCCCATTAGGTGTTGTGATCATCATTGAGGTGCGTTCTGTTCAGGCCATTATTTCAGTACTTCAGTCTTTAATTCCTTCCATTGGCTGTATATTATGTGAACATGTAATATCTGTGATGAAATGCAGTAAGGCACAGTTAACTGTCTAA 1623 0.4054 MWNARVLLRSFSLLHFLVLHSVLPQVSAQGSNATTWNTLSGNPPLVIARGGFSGIFPDSSDFAYLFAVAASLKNVILWCDVQLTKDAQGICIPDLKLENATNIAQNAKYKSSTYPVNGATTSGYFSMDYTLEDLRSNNVFLVQGIYTRTEKFNNNAFQILTVNNVVKTASPPGLWLNIQHDAFYTQHNLSMKNFVRSVSTTVNVSYISSPEAGFLRSIRTDINPKRTKLVFRFMEKGEVDPSTNQTYATLLKNLTSIKTFASGILVPKDYIWPVDLKSHYLQPHTSLVSDAHTVGLEVFASTFENDIPISYNYSYDPVAEHLSFIENGNFSVDGVLSDFPLTSSTAIDCFAHNGLNAPKKVNTLVISKYGASGDYPPCTDLAYEKAFSDGADVLDCPVQISKDGIPFCFSSIDLIPNTNVAQSRFNDLSKSIPEIQSGDGIFAFDLYWNNISSLTPLMLKPFSTLYRNPKFNEKVSLLTLSEFLNFTQGRPSPLGVVIIIEVRSVQAIISVLQSLIPSIGCILCEHVISVMKCSKAQLTV 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00856 540 PANTHER GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE 12 501 - -
Viun6g00856 540 CDD GDPD_SHV3_repeat_1 44 346 - -
Viun6g00856 540 SUPERFAMILY PLC-like phosphodiesterases 42 344 IPR017946 GO:0006629|GO:0008081
Viun6g00856 540 Gene3D Phosphatidylinositol (PI) phosphodiesterase 362 509 IPR017946 GO:0006629|GO:0008081
Viun6g00856 540 Gene3D Phosphatidylinositol (PI) phosphodiesterase 43 346 IPR017946 GO:0006629|GO:0008081
Viun6g00856 540 Pfam Glycerophosphoryl diester phosphodiesterase family 56 342 IPR030395 GO:0006629|GO:0008081
Viun6g00856 540 Pfam Glycerophosphoryl diester phosphodiesterase family 370 495 IPR030395 GO:0006629|GO:0008081
Viun6g00856 540 SUPERFAMILY PLC-like phosphodiesterases 363 505 IPR017946 GO:0006629|GO:0008081
Viun6g00856 540 ProSiteProfiles GP-PDE domain profile. 363 540 IPR030395 GO:0006629|GO:0008081
Viun6g00856 540 ProSiteProfiles GP-PDE domain profile. 44 347 IPR030395 GO:0006629|GO:0008081
Viun6g00856 540 FunFam Glycerophosphodiester phosphodiesterase GDPDL3 42 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun6g00856 Viun-Chr6 18347953 18353620 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun6g00856 5 501 Receptor kinase-like Gene Family AT4G26690 52.590 0.0 529
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00856 - - vun:114188486 1064.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g00856 6 18347953 18353620 Viun6g00856 6 18347953 18353620 ECH