Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun6g00828 ATGCTCCCTCAGCGCATGAAGAAAGCCATCACTGACAACCCTAAGAAGCTTGCCAACTTGATTGACCTCGTCAATCTTCCATCCACGCTCAGAGAATTCGTGGGCCAGTCTCAGATTTCCCGTTTGGGCTGTTTCATGTGCGTTTGGTCCTACATCAAAGCCCAAAATCTGCAGGATCCAAACAACAAGAATGTGATCAACTGTGATGATAAGTTAAAAAGTATTTTGTTGGGGAAACCTCAGGTTGAGTTAGTAGAACTTCCTGCCCTTATCAAGATGCATTTTCCAAAAGAGCCCAAATGA 303 0.4422 MLPQRMKKAITDNPKKLANLIDLVNLPSTLREFVGQSQISRLGCFMCVWSYIKAQNLQDPNNKNVINCDDKLKSILLGKPQVELVELPALIKMHFPKEPK 100
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun6g00828 100 PANTHER SWI/SNF-RELATED MATRIX-ASSOCIATED ACTIN-DEPENDENT REGULATOR OF CHROMATIN SUBFAMILY D 12 100 - -
Viun6g00828 100 CDD SWIB-MDM2_like 24 95 - -
Viun6g00828 100 Pfam SWIB/MDM2 domain 24 95 IPR003121 -
Viun6g00828 100 Gene3D SWIB/MDM2 domain 16 100 IPR036885 -
Viun6g00828 100 SUPERFAMILY SWIB/MDM2 domain 16 97 IPR036885 -
Viun6g00828 100 ProSiteProfiles SWIB/MDM2 domain profile. 19 97 IPR003121 -
Viun6g00828 100 SMART swib_2 20 100 IPR019835 -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SWI/SNF-BAF60b Viun6g00828 SWIB 1.7e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun6g00828 - - gmx:100527179 192.971
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun6g00828 6 18070901 18072630 Viun6g00828 6 18070901 18072630 ECH