Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g04060 ATGGTTCTGGCGGAGTTAGGGGGGAGCATTTCGCGTGCTCTCCAGCAGATGAGCAATGCGACGGTGATCGACGAGAAGGTGCTCAACGATTGCCTCAACGACATCACTCGCGCTCTTCTCCAATCCGATGTTCAATTCAAGCTTGTGCGCGACATGCAGACTAACATCAAGAACATTGTCAACCTCGACGATCTGGCTGCGGGGCACAACAAACGCAGGATCATTCAACAAGCTGTGTTTAACGAACTCTGCAAGATACTGGACCCTGGGAAGCCCTCTTTCACTCCCAAAAAGGGAAAAACAAGTGTCGTCATGTTTGTTGGTTTGCAAGGTTCTGGGAAAACCACAACCTGTACAAAATACGCATATTATCATCAGAAGAAAGGCTGGAAGCCAGCTCTAGTATGTGCGGATACTTTCAGAGCTGGTGCATTTGATCAATTGAAGCAAAATGCAACCAAAGCTAAGATCCCTTTCTATGGAAGCTATATGGAATCTGATCCTGTAAAAATTGCAGTGGAAGGTGTGGAGAGATTCAAGGAAGAAAACTGTGATCTTATAATCGTTGATACCAGTGGGAGGCACAAGCAAGAAGCTGCTCTTTTTGAAGAAATGCGGCAAGTTTCAGAAGCAACGAAACCAGATCTTGTTATATTTGTTATGGATAGCAGTATTGGTCAGGCTGCTTTTGATCAAGCCCAGGCGTTTAAACAGAGTGTTGCAGTTGGAGCTGTAATAGTTACCAAAATGGATGGCCATGCAAAAGGTGGTGGTGCTCTTAGTGCTGTTGCAGCAACAAAGAGTCCTGTCATATTCATTGGAACTGGAGAACATATGGATGAGTTTGAAGTTTTTGATGTTAAGCCATTTGTCAGTCGTTTATTAGGAATGGGTGACTGGTCTGGGTTCATGGACAAAATTCAAGAAGTTGTGCCTATGGATCAACAACCCGAACTACTTCAAAAGCTGTCAGAAGGAAACTTCACCTTGAGAATTATGTATGAGCAGTTTCAGAACATACTTAAAATGGGTCCTATCAGCCAGGTGTTTTCTATGCTTCCCGGATTTAGTGCCGAATTAATGCCAAAAGGCCGTGAGAAAGAAAGCCAGGCAAAAATCAAGCGTTACATGACAATGATGGATTCAATGACAAACGAAGAGTTGGATAGTTCAAACCCAAAACTCATGAATGAATCACGTATTATGCGGATAGCCCGAGGTGCAGGTCGCCAAATTAGGGAAGTGATGGAGATGATGGAAGAGTACAAACGTCTTGCAAAAATATGGAGCAAAATGAAAGGGCTTAAAATACCGAAGAAAGGTGAAATGAGTGCCCTATCCCGAAATATGAATGCCCAGCACATGAGCAAAGTCCTCCCTCCGCAAATGCTGAAACAAATTGGTGGCATGGGTGGATTACAAAACTTGATGAAGCAGATGGGATCTGCCAAAGACATGATGGGAATGGGAGGATTGTTTGGTGGTGGCGGTGATTAG 1497 0.4409 MVLAELGGSISRALQQMSNATVIDEKVLNDCLNDITRALLQSDVQFKLVRDMQTNIKNIVNLDDLAAGHNKRRIIQQAVFNELCKILDPGKPSFTPKKGKTSVVMFVGLQGSGKTTTCTKYAYYHQKKGWKPALVCADTFRAGAFDQLKQNATKAKIPFYGSYMESDPVKIAVEGVERFKEENCDLIIVDTSGRHKQEAALFEEMRQVSEATKPDLVIFVMDSSIGQAAFDQAQAFKQSVAVGAVIVTKMDGHAKGGGALSAVAATKSPVIFIGTGEHMDEFEVFDVKPFVSRLLGMGDWSGFMDKIQEVVPMDQQPELLQKLSEGNFTLRIMYEQFQNILKMGPISQVFSMLPGFSAELMPKGREKESQAKIKRYMTMMDSMTNEELDSSNPKLMNESRIMRIARGAGRQIREVMEMMEEYKRLAKIWSKMKGLKIPKKGEMSALSRNMNAQHMSKVLPPQMLKQIGGMGGLQNLMKQMGSAKDMMGMGGLFGGGGD 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g04060 498 Hamap Signal recognition particle 54 kDa protein [srp54]. 6 477 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Viun5g04060 498 SMART AAA_5 100 277 IPR003593 GO:0016887
Viun5g04060 498 SMART SRP54_N_2 2 87 IPR013822 GO:0005525|GO:0006614
Viun5g04060 498 SMART SRP54_3 101 296 IPR000897 GO:0005525|GO:0006614
Viun5g04060 498 Pfam SRP54-type protein, GTPase domain 102 296 IPR000897 GO:0005525|GO:0006614
Viun5g04060 498 Gene3D - 91 285 IPR027417 -
Viun5g04060 498 Pfam Signal peptide binding domain 327 427 IPR004125 GO:0006614|GO:0008312|GO:0048500
Viun5g04060 498 SUPERFAMILY Signal peptide-binding domain 298 433 IPR036891 GO:0006614|GO:0008312|GO:0048500
Viun5g04060 498 FunFam Signal recognition particle GTPase 5 97 - -
Viun5g04060 498 CDD SRP54_G 102 294 - -
Viun5g04060 498 NCBIfam signal recognition particle protein SRP54 2 427 IPR006325 GO:0003924|GO:0005525|GO:0006614|GO:0008312|GO:0048500
Viun5g04060 498 PANTHER SIGNAL RECOGNITION PARTICLE 54K PROTEIN SRP54 1 484 IPR022941 GO:0003924|GO:0005525|GO:0006614|GO:0048500
Viun5g04060 498 Pfam SRP54-type protein, helical bundle domain 6 83 IPR013822 GO:0005525|GO:0006614
Viun5g04060 498 Gene3D - 312 436 IPR036891 GO:0006614|GO:0008312|GO:0048500
Viun5g04060 498 SUPERFAMILY Domain of the SRP/SRP receptor G-proteins 1 94 IPR036225 -
Viun5g04060 498 FunFam Signal recognition particle 54 kDa protein 311 451 - -
Viun5g04060 498 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 95 298 IPR027417 -
Viun5g04060 498 ProSitePatterns SRP54-type proteins GTP-binding domain signature. 269 282 IPR000897 GO:0005525|GO:0006614
Viun5g04060 498 Gene3D - 5 306 IPR042101 -
Viun5g04060 498 FunFam Signal recognition particle 54 kDa subunit 90 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g04060 Viun-Chr5 48097744 48101505 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g04060 K03106 - gmx:100789217 936.021
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g04060 5 48097744 48101505 Viun5g04060 5 48097744 48101505 ECH
Viun5g04060 5 48097744 48101505 Viun10g02760 10 40578419 40581679 PCT