Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Viun5g03445 ATGAGAAGAAGCAACAACTTGATCGGTTTACTAAACTTCATCACTCTGGTGTTGTCAGTTCCAGTTCTGGGAGGTGGGATATGGCTGGCCACCAGATCCAACGGCACAGAATGCCTGAAGTTCCTTGCGTTGCCGTTGATCATCATAGCAGTGAGCATCATGGTGACTTCCATAGCCGGTTTAACCGGTGCCTGTTACCGGAACCTGTTAGTGATGAGCCTGTACCTGGTGGCCATGATCCTCATAATGCTGTTGTTCCTCGGATTCATCATCTTTGCCTATGCCGTAACGGATAAGGGTTCGGGGAGGGAGACAGAGAACCGCGCTTACTTGGAGTATTACCTAGAGGATTACCAGGGTTGGTTGAAGGAGCGCGTGGAAAGTGATGAATACTGGACAAAAATTAGCTCTTGTGTTAAGGAATCTAAGCTTTGTCGGAAACTTGGGAGAAACATTCATGGAGTGCCTGAAACTGCTCAAGCTTTCTTCTCAAGAAATCTTTCTCCTATTCAGTCCGGATGCTGCAAGCCCCCGACAGAGTGTGGTTACAAATATGAGAACGAGACGGTGTGGAGCTCAGAAGGAGGAGTTGTGGGAAGCAACAACACAGATTGCAGAAAGTGGAGCAATGACCAAAACTTGCTTTGCTATGACTGTGACTCGTGCAAAGCTGGTGTGTTGGCTACACTGAAGAAAACTTGGAGGAGGGTCTCTGTAATCAACATCGTTGTGTTACTTTTCCTTTTCCTTATTTTCATAGTTGCTTATGCAGCCTACAAGAACAACCGCAGAATAGATAACTGTCAACCCTGCGGTGAAACCAAGATCATCAAGTTGCGACCCTAG 846 0.4681 MRRSNNLIGLLNFITLVLSVPVLGGGIWLATRSNGTECLKFLALPLIIIAVSIMVTSIAGLTGACYRNLLVMSLYLVAMILIMLLFLGFIIFAYAVTDKGSGRETENRAYLEYYLEDYQGWLKERVESDEYWTKISSCVKESKLCRKLGRNIHGVPETAQAFFSRNLSPIQSGCCKPPTECGYKYENETVWSSEGGVVGSNNTDCRKWSNDQNLLCYDCDSCKAGVLATLKKTWRRVSVINIVVLLFLFLIFIVAYAAYKNNRRIDNCQPCGETKIIKLRP 281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Viun5g03445 281 PRINTS Transmembrane four family signature 39 65 - -
Viun5g03445 281 PRINTS Transmembrane four family signature 66 94 - -
Viun5g03445 281 PRINTS Transmembrane four family signature 6 29 - -
Viun5g03445 281 Pfam Tetraspanin family 6 255 IPR018499 GO:0016020
Viun5g03445 281 PANTHER TETRASPANIN-8-RELATED 1 264 IPR044991 GO:0009734|GO:0016020
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Viun5g03445 Viun-Chr5 44530214 44534450 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Viun5g03445 1 279 Miscellaneous Gene Families AT5G60220 59.140 4.99e-111 322
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Viun5g03445 - - gmx:100820399 409.068
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Viun5g03445 5 44530214 44534450 Viun5g03445 5 44530214 44534450 ECH
Viun5g03445 5 44530214 44534450 Viun11g02006 11 35669700 35674361 PCT